Statistics Summary Report for BSGI Center | Last updated: Aug 21 2008 |
Target Status Statistics
Total number of targets deposited by BSGI to TargetDB: 1705 View BSGI Target List
Table 1: Status Statistics for BSGI
| Status | Total Number of Targets | (%) Relative to "Cloned" Targets | (%) Relative to "Expressed" Targets | (%) Relative to "Purified" Targets | (%) Relative to "Crystallized" Targets |
| Cloned | 1261 | 100.0 | - | - | - |
| Expressed | 872 | 69.2 | 100.0 | - | - |
| Soluble | 449 | 35.6 | 51.5 | - | - |
| Purified | 469 | 37.2 | 53.8 | 100.0 | - |
| Crystallized | 137 | 10.9 | 15.7 | 29.2 | 100.0 |
| Diffraction-quality Crystals | 72 | 5.7 | 8.3 | 15.4 | 52.6 |
| Diffraction | 0 | 0.0 | 0.0 | 0.0 | 0.0 |
| NMR Assigned | 0 | 0.0 | 0.0 | 0.0 | - |
| HSQC | 21 | 1.7 | 2.4 | 4.5 | - |
| Crystal Structure | 54 | 4.3 | 6.2 | 11.5 | 39.4 |
| NMR Structure | 11 | 0.9 | 1.3 | 2.3 | - |
| In PDB1 | 57 | 4.5 | 6.5 | 12.2 | 35 |
| Work Stopped | 249 | - | - | - | - |
| Test Target | 0 | - | - | - | - |
| Other | 0 | - | - | - | - |
Table 2: Status Statistics for BSGI by Organism
| Organism | Total Number1 | Work Stopped | Cloned | Expressed | Purified | Crystallized | Crystal Structure | NMR Structure | In PDB2 |
| Archaea | 20 | 10 | 4 | 5 | 4 | 1 | 1 | 0 | 1 |
| Bacteria | 1683 | 239 | 1255 | 867 | 465 | 136 | 53 | 11 | 56 |
| Total Prokaryotes | 1703 | 249 | 1259 | 872 | 469 | 137 | 54 | 11 | 57 |
| Leishmania | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| Total | 1705 | 249 | 1261 | 872 | 469 | 137 | 54 | 11 | 57 |
Last updated: Aug 21 2008
Note 1:
Total counts in this table may differ from total number of targets. If targtet
is a hybrid complex
(for example:a complex of human and mouse polypeptides)
it is counted in different organism classifications.
Note 2:
Number of targets with status "in PDB". A target may reference several
PDB IDs (example: structure of the same polypeptides with different ligands).
Multiple targets in TargetDB may identify the same PDB structure when a stucture
is a result of collaboration between different centers and each center includes
the target on its target list.
back to top
Deposited Structure Statistics for BSGI Center
Number of Released X-Ray Structures: 43
Number of Released NMR Structures: 8
Total number of released structures from BSGI center in the PDB: 51
Table 3: PDB Status Statistics for Structures from BSGI
| PDB Status | Number of Structures |
| Total Deposited | 53 |
| Released | 51 |
| Release on Publication | 1 |
| Release on Certain Date | 0 |
| In Process | 1 |
| Last updated: Aug 21 2008 |
| Note 1: "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released("Released on Publication" , "Released on Certain Date", etc.). |
Table 4: List of Structures Deposited in the PDB by BSGI
Total number of structures: 54
Structures of distinct targets: 541
1
A target may reference several PDB IDs
(example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of
distinct targets
Related PDB_ID(s): PDB_ID(s) associated with the same target in targetDB
| PDB_ID | Title | Target_id | Deposition Date | Released Date | PDB Status | Related PDB_ID in TargetDB |
| 3CQJ | crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b) complex with zn2+ | ULAE_ECO57 | 2008-04-03 | 0000-00-00 | AUTH | none |
| 3BE6 | crystal structure of fite (crystal form 2), a group iii periplasmic siderophore binding protein | FITE_ECO57 | 2007-11-16 | 0000-00-00 | HPUB | none |
| 1SBZ | crystal structure of dodecameric fmn-dependent ubix-like decarboxylase from escherichia coli o157:h7 | PAD1_ECO57 | 2004-02-11 | 2004-10-26 | REL | none |
| 2AMJ | crystal structure of modulator of drug activity b from escherichia coli o157:h7 | MDAB_ECO57 | 2005-08-09 | 2006-07-18 | REL | none |
| 1LKZ | crystal structure of d-ribose-5-phosphate isomerase (rpia) from escherichia coli. | RPIA_ECOLI | 2002-04-26 | 2002-05-08 | REL | none |
| 1NT4 | crystal structure of escherichia coli periplasmic glucose-1-phosphatase h18a mutant complexed with glucose-1-phosphate | AGP_ECOLI | 2003-01-28 | 2004-01-13 | REL | none |
| 2FLO | crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 | PPX_ECO57 | 2006-01-06 | 2006-06-06 | REL | none |
| 2FSU | crystal structure of the phnh protein from escherichia coli | PHNH_ECOLI | 2006-01-23 | 2007-03-27 | REL | none |
| 1FC4 | 2-amino-3-ketobutyrate coa ligase | KBL_ECOLI | 2000-07-17 | 2001-05-02 | REL | none |
| 2D40 | crystal structure of z3393 from escherichia coli o157:h7 | Z3393_ECO57 | 2005-10-05 | 2006-09-26 | REL | none |
| 1TQ5 | crystal structure of yhhw from escherichia coli | YHHW_ECOLI | 2004-06-16 | 2005-06-14 | REL | none |
| 3B8N | structure of fepe- bacterial polysaccharide co-polymerase | FEPE_ECO57 | 2007-11-01 | 2008-01-22 | REL | none |
| 1Y00 | solution structure of the carbon storage regulator protein csra | CSRA_ECOLI | 2004-11-13 | 2005-06-21 | REL | none |
| 2B59 | the type ii cohesin dockerin complex | CIPA_CLOTM NON-BSGI:P71143_CLOTM | 2005-09-27 | 2005-10-11 | REL | none |
| 1GZ0 | 23s ribosomal rna g2251 2'o-methyltransferase rlmb | RLMB_ECOLI | 2002-05-03 | 2002-10-17 | REL | none |
| 3B8O | structure of wzze- bacterial polysaccharide co-polymerase | WZZE_ECO57 | 2007-11-01 | 2008-01-22 | REL | none |
| 2FT0 | crystal structure of tdp-fucosamine acetyltransferase (wecd)- complex with acetyl-coa | WECD_ECOL6 | 2006-01-23 | 2006-08-01 | REL | none |
| 1XK7 | crystal structure- c2 form- of escherichia coli crotonobetainyl-coa: carnitine coa transferase (caib) | CAIB_ECOLI | 2004-09-27 | 2005-03-15 | REL | none |
| 1ZPS | crystal structure of methanobacterium thermoautotrophicum phosphoribosyl-amp cyclohydrolase hisi | HIS3_METTH | 2005-05-17 | 2005-08-30 | REL | none |
| 1K75 | the l-histidinol dehydrogenase (hisd) structure implicates domain swapping and gene duplication. | HISX_ECOLI | 2001-10-18 | 2002-02-27 | REL | none |
| 1RRZ | solution structure of glgs protein from e. coli | GLGS_ECOLI | 2003-12-09 | 2004-06-01 | REL | none |
| 2OVI | structure of the heme binding protein chux | CHUX_ECO57 | 2007-02-13 | 2008-02-12 | REL | none |
| 1KON | crystal structure of e.coli yebc | YEBC_ECOLI | 2001-12-21 | 2002-07-17 | REL | none |
| 1FC5 | crystal structure of molybdopterin biosynthesis moea protein | MOEA_ECOLI | 2000-07-17 | 2001-07-25 | REL | none |
| 1R6Y | crystal structure of ygin from escherichia coli | YGIN_ECOLI | 2003-10-17 | 2004-11-02 | REL | none |
| 1U9T | crystal structure analysis of chus, an e. coli heme oxygenase | CHUS_ECO57 | 2004-08-10 | 2005-10-25 | REL | none |
| 1U5W | crystal structure of hypothetical protein yjjx from escherichia coli | YJJX_ECOLI | 2004-07-28 | 2005-08-23 | REL | none |
| 2OZN | the cohesin-dockerin complex of nagj and nagh from clostridium perfringens | Cohesin NON-BSGI:FivarDoc | 2007-02-26 | 2008-05-06 | REL | none |
| 1ZYL | crystal structure of hypothetical protein yihe from escherichia coli | RDOA_ECOLI | 2005-06-10 | 2006-09-19 | REL | none |
| 2R1A | crystal structure of the periplasmic lipopolysaccharide transport protein lpta (yhbn), trigonal form | YHBN_ECOLI | 2007-08-22 | 2008-04-29 | REL | none |
| 1PTM | crystal structure of e.coli pdxa | PDXA_ECOLI | 2003-06-23 | 2003-11-04 | REL | none |
| 1N3B | crystal structure of dephosphocoenzyme a kinase from escherichia coli | COAE_ECOLI | 2002-10-25 | 2003-01-28 | REL | none |
| 1FG7 | crystal structure of l-histidinol phosphate aminotransferase with pyridoxal-5'-phosphate | HIS8_ECOLI | 2000-07-28 | 2001-08-22 | REL | none |
| 2H7A | nmr structure of the conserved protein ycgl from escherichia coli representing the duf709 family reveals a novel a/b/a sandwich fold | YCGL_ECOL6 | 2006-06-01 | 2007-04-17 | REL | none |
| 1TVM | nmr structure of enzyme gatb of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system | PTKB_ECO57 | 2004-06-29 | 2005-09-06 | REL | none |
| 1MC3 | crystal structure of rffh | RMLA2_ECOLI | 2002-08-05 | 2002-11-20 | REL | none |
| 1SG7 | nmr solution structure of the putative cation transport regulator chab | CHAB_ECO57 | 2004-02-23 | 2005-03-08 | REL | none |
| 1O9B | quinate/shikimate dehydrogenase ydib complexed with nadh | YDIB_ECOLI | 2002-12-12 | 2003-02-01 | REL | none |
| 3B8P | fragment of wzzb, polysaccharide co-polymerase from salmonella typhimurium | WZZB_SALTY NON-BSGI:WZZB_ECO57 | 2007-11-01 | 2008-01-22 | REL | none |
| 1YQC | crystal structure of ureidoglycolate hydrolase (alla) from escherichia coli o157:h7 | ALLA_ECO57 | 2005-02-01 | 2005-10-18 | REL | none |
| 1Q18 | crystal structure of e.coli glucokinase (glk) | GLK_ECO57 | 2003-07-18 | 2004-07-27 | REL | none |
| 1L1P | solution structure of the ppiase domain from e. coli trigger factor | TIG_ECOLI | 2002-02-19 | 2003-06-24 | REL | none |
| 1KK9 | crystal structure of e. coli ycio | YCIO_ECOLI | 2001-12-06 | 2002-12-11 | REL | none |
| 1XZO | identification of a disulfide switch in bssco, a member of the sco family of cytochrome c oxidase assembly proteins | YPMQ_BACSU | 2004-11-12 | 2005-03-01 | REL | none |
| 1YNI | crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli | ASTB_ECOLI | 2005-01-24 | 2005-02-15 | REL | none |
| 1KSL | structure of rsua | RSUA_ECOLI | 2002-01-13 | 2002-04-24 | REL | none |
| 1PRZ | crystal structure of pseudouridine synthase rlud catalytic module | RLUD_ECO57 | 2003-06-20 | 2003-11-04 | REL | none |
| 2FPU | crystal structure of the n-terminal domain of e.coli hisb- complex with histidinol | HIS7_ECO57 | 2006-01-17 | 2006-09-05 | REL | none |
| 2AHW | crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-thioester complex with coa- 2 | YDIF_ECO57 | 2005-07-28 | 2005-11-01 | REL | none |
| 1P9K | the solution structure of ybcj from e. coli reveals a recently discovered alfal motif involved in rna-binding | YBCJ_ECOLI | 2003-02-20 | 2003-03-11 | REL | none |
| 1SG5 | solution structure of yaeo, a rho-specific inhibitor of transcription termination | ROF_ECOLI | 2004-02-23 | 2005-07-12 | REL | none |
| 1P9N | crystal structure of escherichia coli mobb. | MOBB_ECOLI | 2003-05-12 | 2003-05-20 | REL | none |
| 2I6R | crystal structure of e. coli hype, a hydrogenase maturation protein | HYPE_ECO57 | 2006-08-29 | 2007-10-23 | REL | none |
| 2F79 | solution structure of napd a pathway specific chaperone in napa maturation | NAPD_ECOLI | 2005-11-30 | 0000-00-00 | WDRN | none |
Note 1: Last updated: Aug 21 2008
back to topSequence Redundancy Statistics
Table 5: Sequence Redundancy Statistics for BSGI by Experimental Status
| Sequence Identity(%) | Novel Targets
Status: Selected |
Novel Targets Status: Cloned |
Novel Targets Status: Expressed |
Novel Targets Status: Purified |
Novel Targets Status: Crystallized |
Novel Targets Status: Crystal Structure | Novel Targets Status: NMR Structure | Novel Targets Status: in PDB |
| <100 | 1599 | 1187 | 849 | 452 | 135 | 49 | 11 | 50 |
| <90 | 1413 | 1098 | 800 | 439 | 131 | 49 | 10 | 50 |
| <70 | 1390 | 1085 | 790 | 435 | 130 | 49 | 10 | 50 |
| <50 | 1361 | 1065 | 779 | 430 | 129 | 49 | 10 | 50 |
| <30 | 1026 | 897 | 696 | 404 | 124 | 49 | 10 | 50 |
| Last updated: 08-04-08 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long |
Table 6:Sequence Redundancy Statistics for Structures Released by BSGI by Year
| Year | Released Structures | Number of Released Structures <30% Identity at Time of Release | Percent(%) of Released Structures <30% Identity(%) at Time of Release |
| 2001 | 3 | 1 | 33 |
| 2002 | 7 | 2 | 29 |
| 2003 | 7 | 2 | 29 |
| 2004 | 5 | 3 | 60 |
| 2005 | 14 | 6 | 43 |
| 2006 | 6 | 3 | 50 |
| 2007 | 3 | 1 | 33 |
| 2008 | 6 | 2 | 33 |
| Total | 51 | 20 | 39 |
| Last updated:08-08-21 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long |