PSI TargetDB

Statistics Summary Report for Structural Genomics Centers in Europe

Last updated: Mar 11 2010


|BIGS| |ISPC| |MSGP| |OPPF| |SPINE| |XMTB| |YSG| |SGC|

Target Status Statistics

Total number of targets deposited by Structural Genomics Centers in Europe to TargetDB: 3313

Table 1: Status Statistics for Structural Genomics Centers in Europe

Status Total Number of Targets(%) Relative to "Cloned" Targets(%) Relative to "Expressed" Targets(%) Relative to "Purified" Targets(%) Relative to "Crystallized" Targets
Cloned2440100.0---
Expressed165868.0100.0--
Soluble84634.751.0--
Purified83434.250.3100.0-
Crystallized2399.814.428.7100.0
Diffraction-quality Crystals1486.18.917.761.9
Diffraction953.95.711.439.7
NMR Assigned291.21.73.5-
HSQC492.03.05.9-
Crystal Structure1727.010.420.672.0
NMR Structure281.11.73.4-
In PDB11225.07.414.640
Work Stopped45----
Test Target1----
Other0----

Last updated: Mar 11 2010
Note 1:   Number of targets with status "in PDB" may not be equal to number of structures determined by a project. A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands). Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes the target on its target list.

Figure 1: Target Experimental Status for Structural Genomics Centers in Europe

Last updated: Mar 11 2010

This graph is normalized relative to number of cloned targets in TargetDB.
Targets that progressed to status "Cloned" constitute 74% of TargetDB.

Table 2: Status Statistics for Structural Genomics Centers in Europe by Organism

These statistics is derived from mapping of target sequences to GenBank using >=98% sequence identity cut off

Organism Total Number1 Work Stopped Cloned Expressed Purified Crystallized Crystal Structure NMR Structure In PDB2
Viruses182111450177802
Archaea51027111100
Bacteria130817841664287122831156
Prokaryota135917868665288123841156
Yeast34219303258101131322
Plasmodium801110000
Arabidopsis202221000
Worm201110011
Drosophila20012941011
Mouse184312510147169411
Human590737531513949301532
Eukaryota10832677465129187611745
Uncultured or unidentified404300000

Last updated: Mar 11 2010

Note 1:   Total counts in this table may differ from total number of targets and structures. A target is counted in different organism specifications if:
- a target is mapped to different organisms
- a targtet is a hybrid complex (for example:a complex of human and mouse polypeptides)

Figure 2: Source Organisms in Structural Genomics Centers in Europe

Last updated: Mar 11 2010 back to top


Deposited Structure Statistics for Structural Genomics Centers in Europe

Number of Released X-Ray Structures: 114

Number of Released NMR Structures: 34

Total number of released structures from Structural Genomics Centers in Europe in the PDB: 148

Table 3: PDB Status Statistics for Structures from Structural Genomics Centers in Europe

PDB StatusBIGSISPCMSGPOPPFSPINEXMTBYSGSGCTotal
Total Deposited91300970150152
Released81300940150148
Release on Publication000000000
Release on Certain Date000000000
In Process100030004
Last updated: Mar 11 2010
Note 1:   "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released("Released on Publication" , "Released on Certain Date", etc.).
Note 2:  Some PDB IDs are cross referenced by different centers. Therefore difference between "Total" number of structures and direct sum of number of structures from individual centers can be observed

Figure 3: Structures Released by Structural Genomics Centers in Europe by Year

Last updated: Mar 11 2010

Table 4: List of Structures Deposited in the PDB by Structural Genomics Centers in Europe

Total number of structures: 138

Structures of distinct targets: 1051

1   A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of distinct targets

Related PDB_ID(s): PDB_ID(s) associated with the same target in targetDB

PDB_ID TitleTarget_id Deposition DateReleased Date PDB StatusRelated PDB_ID in TargetDB
ND_135 BIGSExperimental status "in PDB", PDB ID is not providedPf-cal:CA1462---none
1UUF BIGScrystal structure of a zinc-type alcohol dehydrogenase-like protein yahkASG-yahK2003-12-182004-01-29RELnone
1OG6 BIGSydhf, an aldo-keto reductase from e.coli complexed with nadphASG-ydhF2003-04-242003-05-29RELnone
1J2R BIGScrystal structure of escherichia coli gene product yecd at 1.3 a resolutionASG-yecD2003-01-092004-01-27RELnone
1OKJ BIGSmad crystal structure of the unknown function e. coli yeaz proteinIGS-yeaZ2003-07-262004-09-16RELnone
1GPQ BIGSstructure of ivy complexed with its target, hewlORPH-ykfE2001-11-082003-03-11RELnone
1OI4 BIGScristal structure of yhbo from escherichia coliASG-yhbO2003-06-062003-07-03RELnone
1UQW BIGScrystal structure of ylib protein from escherichia coiASG-yliB2003-10-222003-10-22RELnone
1MZR BIGSstructure of dkga from e.coli at 2.13 a resolution solved by molecular replacementASG-yqhE2002-10-092003-10-28RELnone
2NVB ISPCcontribution of pro275 to the thermostability of the alcohol dehydrogenases (adhs)W002082006-11-122007-11-13RELnone
1ZGB ISPCcrystal structure of torpedo californica acetylcholinesterase in complex with an (r)-tacrine(10)-hupyridone inhibitor.W005682005-04-212005-08-16RELnone
1ZGC ISPCcrystal structure of torpedo californica acetylcholinesterase in complex with an (rs)-tacrine(10)-hupyridone inhibitor.W005672005-04-212005-08-16RELnone
1V04 ISPCserum paraoxonase by directed evolutionW000662004-03-222004-04-23RELnone
2F1O ISPCcrystal structure of nqo1 with dicoumarolW000272005-11-152006-05-16RELnone
1OGS ISPChuman acid-beta-glucosidaseW001862003-05-132003-07-03RELnone
1Y7V ISPCx-ray structure of human acid-beta-glucosidase covalently bound to conduritol b epoxideW005722004-12-102005-04-12RELnone
2B5R ISPC1b lactamase / b lactamase inhibitorW003642005-09-292006-04-11RELnone
1S0W ISPC1b lactamse/ b lactamase inhibitorW001872004-01-052004-02-10RELnone
2B83 ISPCa single amino acid substitution in the clostridium beijerinckii alcohol dehydrogenase is critical for thermostabilizationW002832005-10-062006-09-19RELnone
1Y7W ISPCcrystal structure of a halotolerant carbonic anhydrase from dunaliella salinaW005652004-12-102005-05-03RELnone
1U65 ISPCache w. cpt-11W005662004-07-292005-07-19RELnone
1XXM ISPCthe modular architecture of protein-protein binding siteW001782004-11-072005-01-18RELnone
2OET ISPCcrystal structure of antizyme inhibitorW000072007-01-010000-00-00WDRNnone
ND_154 SPINEExperimental status "in PDB", PDB ID is not providedCIRMMP23---none
1UV1 SPINE-CIRMMP33---1UV2
1UV2 SPINE-CIRMMP33---none
1USL SPINEstructure of mycobacterium tuberculosis ribose-5-phosphate isomerase, rpib, rv2465c, complexed with phosphate.rv2465c TB:Rv2465c2003-11-252004-01-02RELnone
1XDS SPINEcrystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex with s-adenosyl-l-methionine (sam) and 11-deoxy-beta-rhodomycin (dbra)St_022004-09-082004-11-23RELnone
1FCY SPINEisotype selectivity of the human retinoic acid nuclear receptor hrar: the complex with the rarbeta/gamma-selective retinoid cd564IGBMC-0078-0002000-07-192000-09-11RELnone
1R1K SPINEcrystal structure of the ligand-binding domains of the heterodimer ecr/usp bound to ponasterone aIGBMC-0090-000 NON-SPINE:IGBMC-0091-0002003-09-242003-11-18REL1R20
2LBD SPINEligand-binding domain of the human retinoic acid receptor gamma bound to all-trans retinoic acidIGBMC-0078-0001997-08-191997-11-12RELnone
1T5C SPINEcrystal structure of the motor domain of human kinetochore protein cenp-eCENP-E_3422004-05-042005-05-10RELnone
1MVO SPINEcrystal structure of the phop receiver domain from bacillus subtilisIGBMC-1123-0002002-09-262002-10-16RELnone
1M5T SPINEcrystal structure of the response regulator divkIGBMC-1121-0002002-07-102002-11-15REL1M5U 1MAV 1MB0 1MB3
1TXE SPINEsolution structure of the active-centre mutant ile14ala of the histidine-containing phosphocarrier protein (hpr) from staphylococcus carnosusREGEN_HPr_Sc2004-07-042005-03-08RELnone
1NM4 SPINEsolution structure of cu(i)-copc from pseudomonas syringaeCIRMMP012003-01-092003-04-08REL1OT4
2BZE SPINEnmr structure of human rtf1 plus3 domain.BCBRA0222005-08-162007-01-03RELnone
1P6U SPINEnmr structure of the bef3-activated structure of the response regulator chey2-mg2+ from sinorhizobium meliloti12003-04-302003-11-04RELnone
2BSY SPINEepstein barr virus dutpaseP6-000-000-0092005-05-242005-09-15REL2BT1
1OSC SPINEcrystal structure of rat cuta1 at 2.15 a resolutionCIRMMP042003-03-192003-11-25RELnone
1FCX SPINEisotype selectivity of the human retinoic acid nuclear receptor hrar: the complex with the rargamma-selective retinoid bms184394IGBMC-0078-0002000-07-192000-09-11RELnone
1ON4 SPINEsolution structure of soluble domain of sco1 from bacillus subtilisCIRMMP022003-02-272003-11-11RELnone
1SU3 SPINEx-ray structure of human prommp-1: new insights into collagenase actionMPIB-4012004-03-262004-12-21RELnone
1SB6 SPINEsolution structure of a cyanobacterial copper metallochaperone, scatx1CIRMMP342004-02-102004-04-27RELnone
1KA5 SPINErefined solution structure of histidine containing phosphocarrier protein from staphyloccocus aureusREGEN_HPr_Sa1995-11-201996-03-08RELnone
1YCM SPINEsolution structure of matrix metalloproteinase 12 (mmp12) in the presence of n-isobutyl-n-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (nngh)CIRMMP482004-12-222005-04-19RELnone
1YLK SPINEcrystal structure of rv1284 from mycobacterium tuberculosis in complex with thiocyanateRv1284 TB:Rv12842005-01-192005-03-08RELnone
1OLZ SPINEthe ligand-binding face of the semaphorins revealed by the high resolution crystal structure of sema4dOPTIC71642003-08-192003-09-11RELnone
1EXX SPINEenantiomer discrimination illustrated by crystal structures of the human retinoic acid receptor hrargamma ligand binding domain: the complex with the inactive s-enantiomer bms270395.IGBMC-0078-0002000-05-052000-06-09RELnone
1SJW SPINEstructure of polyketide cyclase snoalST_32004-03-042004-04-27RELnone
1TW2 SPINEcrystal structure of carminomycin-4-o-methyltransferase (dnrk) in complex with s-adenosyl-l-homocystein (sah) and 4-methoxy-e-rhodomycin t (m-et)ST_042004-06-302004-09-14RELnone
1OQ3 SPINEa core mutation affecting the folding properties of a soluble domain of the atpase protein copa from bacillus subtilisCIRMMP052003-03-072003-09-16REL1OQ6
1MB3 SPINEcrystal structure of the response regulator divk at ph 8.5 in complex with mg2+IGBMC-1121-0002002-08-022002-12-04RELnone
1UWY SPINEcrystal structure of human carboxypeptidase mMPIB-4272004-02-172004-04-08RELnone
1TL4 SPINEsolution structure of cu(i) hah1CIRMMP272004-06-092004-10-26REL1TL5
2C2I SPINEstructure and function of rv0130, a conserved hypothetical protein from m.tuberculosisrv01302005-09-292006-09-14RELnone
2BF8 SPINEcrystal structure of sumo modified ubiquitin conjugating enzyme e2- 25kSUMO2004-12-062005-02-16RELnone
1QZZ SPINEcrystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex with s-adensyl-l-methionine (sam)St_022003-09-192003-11-25REL1XDS
1YJU SPINEsolution structure of the apo form of the sixth soluble domain of menkes proteinCIRMMP282005-01-152006-01-03RELnone
1FD0 SPINEisotype selectivity of the human retinoic acid nuclear receptor hrar: the complex with the rargamma-selective retinoid sr11254IGBMC-0078-0002000-07-192002-09-27RELnone
1QKU SPINEwild type estrogen nuclear receptor ligand binding domain complexed with estradiolIGBMC-0005-0001999-08-052000-08-18RELnone
1YUR SPINEsolution structure of apo-s100a13 (minimized mean structure)CIRMMP112005-02-142005-10-18RELnone
1X9L SPINEsolution structure of cui-dr1885 from deinococcus radioduransCIRMMP122004-08-232004-08-31REL1X7L
1BON SPINEthree-dimensional structure of bombyxin-ii, an insulin-related brain-secretory peptide of the silkmoth bombyx mori: comparison with insulin and relaxinAF311994-07-211995-01-26RELnone
2BDI SPINEhuman kallikrein 4 complex with cobalt and p-aminobenzamidineMPIB-2092005-10-202006-10-03RELnone
1S6O SPINEsolution structure and backbone dynamics of the apo-form of the second metal-binding domain of the menkes protein atp7aCIRMMP252004-01-262004-04-06REL1S6U
1W74 SPINEx-ray structure of peptidyl-prolyl cis-trans isomerase a, ppia, rv0009, from mycobacterium tuberculosis.rv00092004-08-272004-10-20RELnone
4LBD SPINEligand-binding domain of the human retinoic acid receptor gamma bound to the synthetic agonist bms961IGBMC-0078-0001998-02-041999-03-02RELnone
2BMX SPINEmycobacterium tuberculosis ahpcIPRv2428PALZ TB:Rv24282005-03-162005-05-10RELnone
1RJV SPINEsolution structure of human alpha-parvalbumin refined with a paramagnetism-based strategyCIRMMP072003-11-202004-05-25REL1RK9
1YM3 SPINEcrystal structure of carbonic anhydrase rv3588c from mycobacterium tuberculosisRv35882005-01-202005-03-08RELnone
1KV6 SPINEx-ray structure of the orphan nuclear receptor err3 ligand-binding domain in the constitutively active conformationIGBMC-0019-0002002-01-252003-01-25RELnone
1PFJ SPINEsolution structure of the n-terminal ph/ptb domain of the tfiih p62 subunitIGBMC-0024-0002003-05-272004-06-08RELnone
1SW8 SPINEsolution structure of the n-terminal domain of human n60d calmodulin refined with paramagnetism based strategyCIRMMP352004-03-302004-04-06RELnone
1QKT SPINEmutant estrogen nuclear receptor ligand binding domain complexed with estradiolIGBMC-0005-0001999-08-052000-08-18RELnone
1Y3K SPINEsolution structure of the apo form of the fifth domain of menkes proteinCIRMMP262004-11-252005-03-08RELnone
1OQ6 SPINEsolution structure of copper-s46v copa from bacillus subtilisCIRMMP052003-03-072003-09-16RELnone
1EXA SPINEenantiomer discrimination illustrated by crystal structures of the human retinoic acid receptor hrargamma ligand binding domain: the complex with the active r-enantiomer bms270394.IGBMC-0078-0002000-05-022000-06-09REL1EXX 1FCX 1FCY 1FCZ 1FD0 2LBD 3LBD 4LBD
1G50 SPINEcrystal structure of a wild type her alpha lbd at 2.9 angstrom resolutionIGBMC-0005-0002000-10-302002-02-06REL1QKT 1QKU
1XA3 SPINEcrystal structure of caib, a type iii coa transferase in carnitine metabolismAD592004-08-252004-11-16RELnone
1UB1 SPINEsolution structure of the matrix attachment region-binding domain of chicken mecp232003-03-272003-08-05RELnone
1YJR SPINEsolution structure of the apo form of the sixth soluble domain a69p mutant of menkes proteinCIRMMP292005-01-152006-01-03RELnone
1Q0Z SPINEcrystal structure of aclacinomycin methylesterase (rdmc) with bound product analogue, 10-decarboxymethylaclacinomycin a (dcma)St_12003-07-182003-11-25RELnone
2BEP SPINEcrystal structure of ubiquitin conjugating enzyme e2-25kHip22004-11-292005-02-16RELnone
2BDG SPINEhuman kallikrein 4 complex with nickel and p-aminobenzamidineMPIB-2092005-10-202006-10-03REL2BDH 2BDI
1ZJ8 SPINEstructure of mycobacterium tuberculosis nira proteinMtb1 TB:Rv23912005-04-282005-05-31RELnone
1FCZ SPINEisotype selectivity of the human retinoic acid nuclear receptor hrar: the complex with the panagonist retinoid bms181156IGBMC-0078-0002000-07-192000-09-11RELnone
1UVQ SPINEcrystal structure of hla-dq0602 in complex with a hypocretin peptideOPTIC71722004-01-222004-02-05RELnone
1YJE SPINEcrystal structure of the rngfi-b ligand-binding domainIGBMC-1013-0002005-01-142005-02-22RELnone
1MAV SPINEcrystal structure of the response regulator divk at ph 6.0 in complex with mn2+IGBMC-1121-0002002-08-022002-12-04RELnone
3LBD SPINEligand-binding domain of the human retinoic acid receptor gamma bound to 9-cis retinoic acidIGBMC-0078-0001998-02-041999-03-02RELnone
1SZW SPINEcrystal structure of e. coli trna pseudouridine synthase trudAF462004-04-062004-04-20RELnone
1UOS SPINEthe crystal structure of the snake venom toxin convulxinOX_CVX2003-09-222003-10-14RELnone
1LBD SPINEligand-binding domain of the human nuclear receptor rxr-alphaIGBMC-0017-0001996-05-221996-11-08RELnone
2BDH SPINEhuman kallikrein 4 complex with zinc and p-aminobenzamidineMPIB-2092005-10-202006-10-03RELnone
1P6Q SPINEnmr structure of the response regulator chey2 from sinorhizobium meliloti, complexed with mg++12003-04-302004-06-15REL1P6U
1TTX SPINEsolution stucture of human beta parvalbumin (oncomodulin) refined with a paramagnetism based strategyCIRMMP082004-06-232005-01-18RELnone
2BT1 SPINEepstein barr virus dutpase in complex with a,b-imino dutpP6-000-000-0092005-05-242005-09-15RELnone
1S6U SPINEsolution structure and backbone dynamics of the cu(i) form of the second metal-binding domain of the menkes protein atp7aCIRMMP252004-01-272004-04-06RELnone
1O6Y SPINEcatalytic domain of pknb kinase from mycobacterium tuberculosisIPRv0014cPALZ TB:Rv0014c2002-10-212003-01-30RELnone
1SO9 SPINEsolution structure of apocox11, 30 structuresCIRMMP182004-03-132004-08-10RELnone
1P6T SPINEstructure characterization of the water soluble region of p-type atpase copa from bacillus subtilisCIRMMP062003-04-302003-12-16RELnone
1OT4 SPINEsolution structure of cu(ii)-copc from pseudomonas syringaeCIRMMP012003-03-212003-07-08RELnone
2BNG SPINEstructure of an m.tuberculosis leh-like epoxide hydrolaserv27402005-03-242005-08-03RELnone
1DKF SPINEcrystal structure of a heterodimeric complex of rar and rxr ligand-binding domainsIGBMC-0012-0001999-12-072000-04-19RELnone
1O6E SPINEepstein-barr virus proteaseP6-000-000-0142002-09-132002-11-14RELnone
1TL5 SPINEsolution structure of apohah1CIRMMP272004-06-092004-10-26RELnone
1MB0 SPINEcrystal structure of the response regulator divk at ph 8.0 in complex with mn2+IGBMC-1121-0002002-08-022002-12-04RELnone
1NAQ SPINEcrystal structure of cuta1 from e.coli at 1.7 a resolutionCIRMMP032002-11-282003-11-25RELnone
1M5U SPINEcrystal structure of the response regulator divk. structure at ph 8.0 in the apo-formIGBMC-1121-0002002-07-102002-11-15RELnone
1G2N SPINEcrystal structure of the ligand binding domain of the ultraspiracle protein usp, the ortholog of rxrs in insectsIGBMC-0091-0002000-10-202001-04-21REL1R1K 1R20
2BI0 SPINEx-ray structure of a conserved hypothetical protein, rv0216, from mycobacterium tuberculosis.rv0216 TB:Rv02162005-01-202005-04-25RELnone
1Q0R SPINEcrystal structure of aclacinomycin methylesterase (rdmc) with bound product analogue, 10-decarboxymethylaclacinomycin t (dcmat)St_12003-07-172003-11-25REL1Q0Z
1W6V SPINEsolution structure of the dusp domain of husp15BCBRA0162004-08-242006-01-12RELnone
1ZT4 SPINEthe crystal structure of human cd1d with and without alpha-galactosylceramideCD1d_cell_surface_antigen2005-05-262005-07-19RELnone
1Y3J SPINEsolution structure of the copper(i) form of the fifth domain of menkes proteinCIRMMP262004-11-252005-03-08REL1Y3K
1R20 SPINEcrystal structure of the ligand-binding domains of the heterodimer ecr/usp bound to the synthetic agonist byi06830IGBMC-0090-000 NON-SPINE:IGBMC-0091-0002003-09-252003-11-18RELnone
1RK9 SPINEsolution structure of human alpha-parvalbumin (minimized average structure)CIRMMP072003-11-212004-06-08RELnone
1Q7X SPINEsolution structure of the alternatively spliced pdz2 domain (pdz2b) of ptp-bas (hptp1e)22003-08-202003-12-02RELnone
1X7L SPINEsolution structure of apo-dr1885 from deinococcus radioduransCIRMMP122004-08-162004-08-31Replaced by:2JQAnone
1W66 XMTBtitle withheldrv2217 TB:Rv22172004-08-132005-12-08RELnone
2BZR XMTBcrystal structure of accd5 (rv3280), an acyl-coa carboxylase beta- subunit from mycobacterium tuberculosisrv32802005-08-222007-01-02RELnone
1YSR XMTBcrystal structure of atp binding domain of prrb from mycobacterium tuberculosisrv0902c TB:Rv0902c2005-02-092005-07-12RELnone
1YS7 XMTBcrystal structure of the response regulator protein prra comlexed with mg2+rv0903c TB:Rv0903c2005-02-072006-02-07RELnone
1ZEL XMTBcrystal structure of rv2827c protein from mycobacterium tuberculosisrv2827c TB:Rv2827c2005-04-192006-05-02RELnone
1YL5 XMTBcrystal structure of mycobacterium tuberculosis dihydrodipicolinate reductase (rv2773c) (crystal form a)rv2773c TB:Rv2773c2005-01-192006-01-17RELnone
1S8N XMTBcrystal structure of rv1626 from mycobacterium tuberculosisrv1626 TB:Rv16262004-02-032004-09-21REL1SD5
1SD5 XMTBcrystal structure of rv1626rv1626 TB:Rv16262004-02-132004-09-21RELnone
1YS6 XMTBcrystal structure of the response regulatory protein prra from mycobacterium tuberculosisrv0903c TB:Rv0903c2005-02-072006-02-07REL1YS7
1YL6 XMTBcrystal structure of mycobacterium tuberculosis dihydrodipicolinate reductase (rv2773c) (crystal form b)rv2773c TB:Rv2773c2005-01-192006-01-17RELnone
1W0D XMTBthe high resolution structure of mycobacterium tuberculosis leub (rv2995c)rv2995c TB:Rv2995c2004-06-032004-12-14RELnone
1YS3 XMTBcrystal structure of the atp binding domain of prrb from mycobacterium tuberculosisrv0902c TB:Rv0902c2005-02-072005-07-12REL1YSR
1YL7 XMTBthe crystal structure of mycobacterium tuberculosis dihydrodipicolinate reductase (rv2773c) in complex with nadh (crystal form c)rv2773c TB:Rv2773c2005-01-192006-01-17RELnone
2BJB XMTBmycobacterium tuberculosis epsp synthase in unliganded staterv3227 TB:Rv32272005-02-012006-03-09RELnone
1XXX XMTBcrystal structure of dihydrodipicolinate synthase (dapa, rv2753c) from mycobacterium tuberculosisrv2753c TB:Rv2753c2004-11-092006-02-14RELnone
2BT5 XMTBstructure of rv2140, a phosphatidyl-ethanolamine binding protein from mycobacterium tuberuculosisrv2140c2005-05-260000-00-00WDRNnone
2CBK XMTBx-ray crystal structure of rv2018 from mycobacterium tuberculosisrv20182006-01-050000-00-00WDRNnone
1ZKV XMTBthe structure of the regx3 response regulator from mycobacterium tuberculosisrv04912005-05-040000-00-00WDRNnone

Note 1:  Last updated: Mar 11 2010

back to top

Sequence Redundancy Statistics

Table 5: Sequence Redundancy Statistics for Structural Genomics Centers in Europe by Experimental Status

Sequence Identity(%)Novel Targets
Status:
Selected
Novel Targets
Status:
Cloned
Novel Targets
Status:
Expressed
Novel Targets
Status:
Purified
Novel Targets
Status:
Crystallized
Novel Targets
Status:
Crystal Structure
Novel Targets
Status:
NMR Structure
Novel Targets
Status:
in PDB
<100669745582559144136214428205
<90656844862526142935814325201
<70622443022447139134213525194
<50535637972271128333713224185
<30334825551681101129812323168
Last updated: 10-03-08
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long

Table 6: Sequence Redundancy Statistics for Structures Released by Structural Genomics Centers in Europe by Year

Year Released Structures Number of Released Structures <30% Identity at Time of Release Percent(%) of Released Structures <30% Identity(%) at Time of Release
<= 20001400
2001100
2002900
200326831
200431929
200528725
200618211
2007300
Total1302620
Last updated:10-03-11
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long

Figure 4:   Comparison of Novel Structures with Number of Structures Released by Structural Genomics Centers in Europe by Year

Note 1:  Last updated:  10-03-11
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long
back to top