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Statistics Summary Report for ISFI Center

                         Last updated: Jul 2 2008



Target Status Statistics

Total number of targets deposited by ISFI to TargetDB: 249      View ISFI Target List

Table 1: Status Statistics for ISFI

Status Total Number of Targets(%) Relative to "Cloned" Targets(%) Relative to "Expressed" Targets(%) Relative to "Purified" Targets(%) Relative to "Crystallized" Targets
Cloned202100.0---
Expressed11657.4100.0--
Soluble5024.843.1--
Purified4019.834.5100.0-
Crystallized2713.423.367.5100.0
Diffraction-quality Crystals157.412.937.555.6
Diffraction136.411.232.548.1
NMR Assigned00.00.00.0-
HSQC00.00.00.0-
Crystal Structure94.57.822.533.3
NMR Structure00.00.00.0-
In PDB163.05.215.022
Work Stopped0----
Test Target0----
Other0----

Last updated: Jul 2 2008

Table 2: Status Statistics for ISFI by Organism

Organism Total Number1 Work Stopped Cloned Expressed Purified Crystallized Crystal Structure NMR Structure In PDB2
Archaea202000000
Bacteria23501911123827906
Total Prokaryotes23701931123827906
Yeast909420000
Human200000000
Other Eukaryotes100000000
Total Eukaryotes1209420000
Total24902021164027906

Last updated: Jul 2 2008

Note 1:   Total counts in this table may differ from total number of targets. If targtet is a hybrid complex
(for example:a complex of human and mouse polypeptides) it is counted in different organism classifications.

Note 2:   Number of targets with status "in PDB". A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes
the target on its target list.
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Deposited Structure Statistics for ISFI Center

Number of Released X-Ray Structures: 4

Number of Released NMR Structures: 1

Total number of released structures from ISFI center in the PDB: 5

Table 3: PDB Status Statistics for Structures from ISFI

PDB StatusNumber of Structures
Total Deposited5
Released5
In Process0
Last updated: Jul 2 2008
Note 1:   "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released("Released on Publication" , "Released on Certain Date", etc.).

Table 4: List of Structures Deposited in the PDB by ISFI

Total number of structures: 5

Structures of distinct targets: 51

1   A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of distinct targets

Related PDB_ID(s): PDB_ID(s) associated with the same target in targetDB

PDB_ID TitleTarget_id Deposition DateReleased Date PDB StatusRelated PDB_ID in TargetDB
2NYX crystal structure of rv1404 from mycobacterium tuberculosisISFI1552006-11-212006-12-05RELnone
2IB0 crystal structure of a conserved hypothetical protein, rv2844, from mycobacterium tuberculosisISFI1952006-09-082006-09-26RELnone
2G38 a pe/ppe protein complex from mycobacterium tuberculosisISFI142 TB:Rv2430c TB:Rv2431c ISFI:ISFI1412006-02-172006-03-14RELnone
2JPB solution structure of ompr-c dna binding proteinISFI3332007-05-032007-06-12RELnone
2G2D crystal structure of a putative pduo-type atp:cobalamin adenosyltransferase from mycobacterium tuberculosisISFI15 TB:Rv1314c2006-02-152006-03-28RELnone

Note 1:  Last updated: Jul 2 2008

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Sequence Redundancy Statistics

Table 5: Sequence Redundancy Statistics for ISFI by Experimental Status

Sequence Identity(%)Novel Targets
Status:
Selected
Novel Targets
Status:
Cloned
Novel Targets
Status:
Expressed
Novel Targets
Status:
Purified
Novel Targets
Status:
Crystallized
Novel Targets
Status:
Crystal Structure
Novel Targets
Status:
in PDB
<10021717185382696
<9021617084382696
<7021517084382696
<5021416984382696
<3016714877352696
Last updated: 08-04-08
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long

Table 6:Sequence Redundancy Statistics for Structures Released by ISFI by Year

Year Released Structures Number of Released Structures <30% Identity at Time of Release Percent(%) of Released Structures <30% Identity(%) at Time of Release
20064375
2007100
Total5360
Last updated:08-07-02
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long
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