Statistics Summary Report for Non-PSI Structural Genomics Centers in North America | Last updated: Jul 2 2008 |
|BSGI| |S2F| |SSGCID|
- Target Status Statistics
- Table 1: Status Statistics for Non-PSI Structural Genomics Centers in North America
- Figure 1: Target Experimental Status for Non-PSI Structural Genomics Centers in North America
- Table 2: Status Statistics for Non-PSI Structural Genomics Centers in North America by Organisms
- Figure 2: Source Organisms at Non-PSI Structural Genomics Centers in North America
- Deposited Structure Statistics
- Table 3: PDB Status Statistics for Structures from Non-PSI Structural Genomics Centers in North America
- Figure 3: Structures Released by Non-PSI Structural Genomics Centers in North America by Year
- Table 4: List of Structures Deposited by Non-PSI Structural Genomics Centers in North America in the PDB
- Sequence Redundancy Statistics
- Table 5: Sequence Redundancy Statistics for Non-PSI Structural Genomics Centers in North America by Experimental Status
- Table 6: Sequence Redundancy Statistics for Structures Released by Non-PSI Structural Genomics Centers in North America in the PDB by Year
- Figure 4: Comparison of Novel Structures with Number of Structures Released by Non-PSI Structural Genomics Centers in North America by Year
Target Status Statistics
Total number of targets deposited by Non-PSI Structural Genomics Centers in North America to TargetDB: 2387
Table 1: Status Statistics for Non-PSI Structural Genomics Centers in North America
| Status | Total Number of Targets | (%) Relative to "Cloned" Targets | (%) Relative to "Expressed" Targets | (%) Relative to "Purified" Targets | (%) Relative to "Crystallized" Targets |
| Cloned | 1761 | 100.0 | - | - | - |
| Expressed | 1222 | 69.4 | 100.0 | - | - |
| Soluble | 600 | 34.1 | 49.1 | - | - |
| Purified | 659 | 37.4 | 53.9 | 100.0 | - |
| Crystallized | 218 | 12.4 | 17.8 | 33.1 | 100.0 |
| Diffraction-quality Crystals | 95 | 5.4 | 7.8 | 14.4 | 43.6 |
| Diffraction | 63 | 3.6 | 5.2 | 9.6 | 28.9 |
| NMR Assigned | 1 | 0.1 | 0.1 | 0.2 | - |
| HSQC | 35 | 2.0 | 2.9 | 5.3 | - |
| Crystal Structure | 65 | 3.7 | 5.3 | 9.9 | 29.8 |
| NMR Structure | 12 | 0.7 | 1.0 | 1.8 | - |
| In PDB1 | 108 | 6.1 | 8.8 | 16.4 | 45 |
| Work Stopped | 249 | - | - | - | - |
| Test Target | 0 | - | - | - | - |
| Other | 0 | - | - | - | - |
Last updated: Jul 2 2008
Note 1:
Number of targets with status "in PDB". A target may reference several
PDB IDs (example: structure of the same polypeptides with different ligands).
Multiple targets in TargetDB may identify the same PDB structure when a stucture
is a result of collaboration between different centers and each center includes
the target on its target list.
Figure 1: Target Experimental Status for Non-PSI Structural Genomics Centers in North America
Last updated: Jul 2 2008
This graph is normalized
relative to number of cloned targets in TargetDB.
Targets that progressed to status "Cloned" constitute 74% of TargetDB.
Table 2: Status Statistics for Non-PSI Structural Genomics Centers in North America by Organism
| Organism | Total Number1 | Work Stopped | Cloned | Expressed | Purified | Crystallized | Crystal Structure | NMR Structure | In PDB2 |
| Archaea | 20 | 10 | 3 | 5 | 4 | 1 | 1 | 0 | 1 |
| Bacteria | 2013 | 239 | 1534 | 1041 | 582 | 181 | 54 | 12 | 100 |
| Total Prokaryotes | 2033 | 249 | 1537 | 1046 | 586 | 182 | 55 | 12 | 101 |
| Leishmania | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| Total | 2035 | 249 | 1539 | 1046 | 586 | 182 | 55 | 12 | 101 |
Last updated: Jul 2 2008
Note 1:
Total counts in this table may differ from total number of targets. If targtet
is a hybrid complex
(for example:a complex of human and mouse polypeptides)
it is counted in different organism classifications.
Note 2:
Number of targets with status "in PDB". A target may reference several
PDB IDs (example: structure of the same polypeptides with different ligands).
Multiple targets in TargetDB may identify the same PDB structure when a stucture
is a result of collaboration between different centers and each center includes
the target on its target list.
Figure 2: Source Organisms in Non-PSI Structural Genomics Centers in North America
Last updated: Jul 2 2008
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Deposited Structure Statistics for Non-PSI Structural Genomics Centers in North America
Number of Released X-Ray Structures: 93
Number of Released NMR Structures: 15
Total number of released structures from Non-PSI Structural Genomics Centers in North America in the PDB: 108
Table 3: PDB Status Statistics for Structures from Non-PSI Structural Genomics Centers in North America
| PDB Status | BSGI | S2F | SSGCID | Total |
| Total Deposited | 53 | 51 | 7 | 111 |
| Released | 51 | 51 | 6 | 108 |
| Release on Publication | 1 | 0 | 0 | 1 |
| Release on Certain Date | 0 | 0 | 0 | 0 |
| In Process | 1 | 0 | 1 | 2 |
| Last updated: Jul 2 2008 |
| Note 1: "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released("Released on Publication" , "Released on Certain Date", etc.). |
| Note 2: Some PDB IDs are cross referenced by different centers. Therefore difference between "Total" number of structures and direct sum of number of structures from individual centers can be observed |
Figure 3: Structures Released by Non-PSI Structural Genomics Centers in North America by Year
Table 4: List of Structures Deposited in the PDB by Non-PSI Structural Genomics Centers in North America
Total number of structures: 112
Structures of distinct targets: 1051
1
A target may reference several PDB IDs
(example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of
distinct targets
Related PDB_ID(s): PDB_ID(s) associated with the same target in targetDB
| PDB_ID | Center | Title | Target_id | Deposition Date | Released Date | PDB Status | Related PDB_ID in TargetDB |
| 3CQJ | BSGI | crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b) complex with zn2+ | ULAE_ECO57 | 2008-04-03 | 0000-00-00 | AUTH | none |
| 3BE6 | BSGI | crystal structure of fite (crystal form 2), a group iii periplasmic siderophore binding protein | FITE_ECO57 | 2007-11-16 | 0000-00-00 | HPUB | none |
| 1SBZ | BSGI | crystal structure of dodecameric fmn-dependent ubix-like decarboxylase from escherichia coli o157:h7 | PAD1_ECO57 | 2004-02-11 | 2004-10-26 | REL | none |
| 2AMJ | BSGI | crystal structure of modulator of drug activity b from escherichia coli o157:h7 | MDAB_ECO57 | 2005-08-09 | 2006-07-18 | REL | none |
| 1LKZ | BSGI | crystal structure of d-ribose-5-phosphate isomerase (rpia) from escherichia coli. | RPIA_ECOLI | 2002-04-26 | 2002-05-08 | REL | none |
| 1NT4 | BSGI | crystal structure of escherichia coli periplasmic glucose-1-phosphatase h18a mutant complexed with glucose-1-phosphate | AGP_ECOLI | 2003-01-28 | 2004-01-13 | REL | none |
| 2FLO | BSGI | crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 | PPX_ECO57 | 2006-01-06 | 2006-06-06 | REL | none |
| 2FSU | BSGI | crystal structure of the phnh protein from escherichia coli | PHNH_ECOLI | 2006-01-23 | 2007-03-27 | REL | none |
| 1FC4 | BSGI | 2-amino-3-ketobutyrate coa ligase | KBL_ECOLI | 2000-07-17 | 2001-05-02 | REL | none |
| 2D40 | BSGI | crystal structure of z3393 from escherichia coli o157:h7 | Z3393_ECO57 | 2005-10-05 | 2006-09-26 | REL | none |
| 1TQ5 | BSGI | crystal structure of yhhw from escherichia coli | YHHW_ECOLI | 2004-06-16 | 2005-06-14 | REL | none |
| 3B8N | BSGI | structure of fepe- bacterial polysaccharide co-polymerase | FEPE_ECO57 | 2007-11-01 | 2008-01-22 | REL | none |
| 1Y00 | BSGI | solution structure of the carbon storage regulator protein csra | CSRA_ECOLI | 2004-11-13 | 2005-06-21 | REL | none |
| 2B59 | BSGI | the type ii cohesin dockerin complex | CIPA_CLOTM NON-BSGI:P71143_CLOTM | 2005-09-27 | 2005-10-11 | REL | none |
| 1GZ0 | BSGI | 23s ribosomal rna g2251 2'o-methyltransferase rlmb | RLMB_ECOLI | 2002-05-03 | 2002-10-17 | REL | none |
| 3B8O | BSGI | structure of wzze- bacterial polysaccharide co-polymerase | WZZE_ECO57 | 2007-11-01 | 2008-01-22 | REL | none |
| 2FT0 | BSGI | crystal structure of tdp-fucosamine acetyltransferase (wecd)- complex with acetyl-coa | WECD_ECOL6 | 2006-01-23 | 2006-08-01 | REL | none |
| 1XK7 | BSGI | crystal structure- c2 form- of escherichia coli crotonobetainyl-coa: carnitine coa transferase (caib) | CAIB_ECOLI | 2004-09-27 | 2005-03-15 | REL | none |
| 1ZPS | BSGI | crystal structure of methanobacterium thermoautotrophicum phosphoribosyl-amp cyclohydrolase hisi | HIS3_METTH | 2005-05-17 | 2005-08-30 | REL | none |
| 1K75 | BSGI | the l-histidinol dehydrogenase (hisd) structure implicates domain swapping and gene duplication. | HISX_ECOLI | 2001-10-18 | 2002-02-27 | REL | none |
| 1RRZ | BSGI | solution structure of glgs protein from e. coli | GLGS_ECOLI | 2003-12-09 | 2004-06-01 | REL | none |
| 2OVI | BSGI | structure of the heme binding protein chux | CHUX_ECO57 | 2007-02-13 | 2008-02-12 | REL | none |
| 1KON | BSGI | crystal structure of e.coli yebc | YEBC_ECOLI | 2001-12-21 | 2002-07-17 | REL | none |
| 1FC5 | BSGI | crystal structure of molybdopterin biosynthesis moea protein | MOEA_ECOLI | 2000-07-17 | 2001-07-25 | REL | none |
| 1R6Y | BSGI | crystal structure of ygin from escherichia coli | YGIN_ECOLI | 2003-10-17 | 2004-11-02 | REL | none |
| 1U9T | BSGI | crystal structure analysis of chus, an e. coli heme oxygenase | CHUS_ECO57 | 2004-08-10 | 2005-10-25 | REL | none |
| 1U5W | BSGI | crystal structure of hypothetical protein yjjx from escherichia coli | YJJX_ECOLI | 2004-07-28 | 2005-08-23 | REL | none |
| 2OZN | BSGI | the cohesin-dockerin complex of nagj and nagh from clostridium perfringens | Cohesin NON-BSGI:FivarDoc | 2007-02-26 | 2008-05-06 | REL | none |
| 1ZYL | BSGI | crystal structure of hypothetical protein yihe from escherichia coli | RDOA_ECOLI | 2005-06-10 | 2006-09-19 | REL | none |
| 2R1A | BSGI | crystal structure of the periplasmic lipopolysaccharide transport protein lpta (yhbn), trigonal form | YHBN_ECOLI | 2007-08-22 | 2008-04-29 | REL | none |
| 1PTM | BSGI | crystal structure of e.coli pdxa | PDXA_ECOLI | 2003-06-23 | 2003-11-04 | REL | none |
| 1N3B | BSGI | crystal structure of dephosphocoenzyme a kinase from escherichia coli | COAE_ECOLI | 2002-10-25 | 2003-01-28 | REL | none |
| 1FG7 | BSGI | crystal structure of l-histidinol phosphate aminotransferase with pyridoxal-5'-phosphate | HIS8_ECOLI | 2000-07-28 | 2001-08-22 | REL | none |
| 2H7A | BSGI | nmr structure of the conserved protein ycgl from escherichia coli representing the duf709 family reveals a novel a/b/a sandwich fold | YCGL_ECOL6 | 2006-06-01 | 2007-04-17 | REL | none |
| 1TVM | BSGI | nmr structure of enzyme gatb of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system | PTKB_ECO57 | 2004-06-29 | 2005-09-06 | REL | none |
| 1MC3 | BSGI | crystal structure of rffh | RMLA2_ECOLI | 2002-08-05 | 2002-11-20 | REL | none |
| 1SG7 | BSGI | nmr solution structure of the putative cation transport regulator chab | CHAB_ECO57 | 2004-02-23 | 2005-03-08 | REL | none |
| 1O9B | BSGI | quinate/shikimate dehydrogenase ydib complexed with nadh | YDIB_ECOLI | 2002-12-12 | 2003-02-01 | REL | none |
| 3B8P | BSGI | fragment of wzzb, polysaccharide co-polymerase from salmonella typhimurium | WZZB_SALTY NON-BSGI:WZZB_ECO57 | 2007-11-01 | 2008-01-22 | REL | none |
| 1YQC | BSGI | crystal structure of ureidoglycolate hydrolase (alla) from escherichia coli o157:h7 | ALLA_ECO57 | 2005-02-01 | 2005-10-18 | REL | none |
| 1Q18 | BSGI | crystal structure of e.coli glucokinase (glk) | GLK_ECO57 | 2003-07-18 | 2004-07-27 | REL | none |
| 1L1P | BSGI | solution structure of the ppiase domain from e. coli trigger factor | TIG_ECOLI | 2002-02-19 | 2003-06-24 | REL | none |
| 1KK9 | BSGI | crystal structure of e. coli ycio | YCIO_ECOLI | 2001-12-06 | 2002-12-11 | REL | none |
| 1XZO | BSGI | identification of a disulfide switch in bssco, a member of the sco family of cytochrome c oxidase assembly proteins | YPMQ_BACSU | 2004-11-12 | 2005-03-01 | REL | none |
| 1YNI | BSGI | crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli | ASTB_ECOLI | 2005-01-24 | 2005-02-15 | REL | none |
| 1KSL | BSGI | structure of rsua | RSUA_ECOLI | 2002-01-13 | 2002-04-24 | REL | none |
| 1PRZ | BSGI | crystal structure of pseudouridine synthase rlud catalytic module | RLUD_ECO57 | 2003-06-20 | 2003-11-04 | REL | none |
| 2FPU | BSGI | crystal structure of the n-terminal domain of e.coli hisb- complex with histidinol | HIS7_ECO57 | 2006-01-17 | 2006-09-05 | REL | none |
| 2AHW | BSGI | crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-thioester complex with coa- 2 | YDIF_ECO57 | 2005-07-28 | 2005-11-01 | REL | none |
| 1P9K | BSGI | the solution structure of ybcj from e. coli reveals a recently discovered alfal motif involved in rna-binding | YBCJ_ECOLI | 2003-02-20 | 2003-03-11 | REL | none |
| 1SG5 | BSGI | solution structure of yaeo, a rho-specific inhibitor of transcription termination | ROF_ECOLI | 2004-02-23 | 2005-07-12 | REL | none |
| 1P9N | BSGI | crystal structure of escherichia coli mobb. | MOBB_ECOLI | 2003-05-12 | 2003-05-20 | REL | none |
| 2I6R | BSGI | crystal structure of e. coli hype, a hydrogenase maturation protein | HYPE_ECO57 | 2006-08-29 | 2007-10-23 | REL | none |
| 2F79 | BSGI | solution structure of napd a pathway specific chaperone in napa maturation | NAPD_ECOLI | 2005-11-30 | 0000-00-00 | WDRN | none |
| 1M65 | S2F | ycdx protein | ycdX | 2002-07-12 | 2003-04-22 | REL | none |
| 1NNV | S2F | the solution structure of hi1450 | HI1450 | 2003-01-14 | 2004-01-27 | REL | none |
| 1JJV | S2F | dephospho-coa kinase in complex with atp | HI0890 | 2001-07-09 | 2002-05-01 | REL | none |
| 1NMP | S2F | structural genomics, ybgi protein, unknown function | ybgI | 2003-01-10 | 2004-01-20 | REL | none |
| 1JOV | S2F | crystal structure analysis of hi1317 | HI1317 | 2001-07-31 | 2003-06-24 | REL | none |
| 1J9A | S2F | oligoribonuclease | HI1715 | 2001-05-24 | 2003-06-24 | REL | none |
| 1NO5 | S2F | structure of hi0073 from haemophilus influenzae, the nucleotide binding domain of the hi0073/hi0074 two protein nucleotidyl transferase. | HI0073 | 2003-01-15 | 2004-03-16 | REL | none |
| 1IMU | S2F | solution structure of hi0257, a ribosome binding protein | HI0257 | 2001-05-11 | 2001-10-03 | REL | none |
| 1NMO | S2F | structural genomics, protein ybgi, unknown function | ybgI | 2003-01-10 | 2004-01-20 | REL | 1NMP |
| 1JOE | S2F | crystal structure of autoinducer-2 production protein (luxs) from heamophilus influenzae | HI0491 | 2001-07-27 | 2001-08-08 | REL | none |
| 1HTW | S2F | complex of hi0065 with adp and magnesium | HI0065 | 2001-01-01 | 2002-08-07 | REL | none |
| 1NRK | S2F | ygfz protein | ygfZ | 2003-01-24 | 2004-03-09 | REL | none |
| 1MXI | S2F | structure of yibk from haemophilus influenzae (hi0766): a methyltransferase with a cofactor bound at a site formed by a knot | HI0766 | 2002-10-02 | 2003-02-25 | REL | none |
| 1RW1 | S2F | yffb (pa3664) protein | PA3664 | 2003-12-15 | 2004-11-02 | REL | none |
| 1R8G | S2F | structure and function of ybdk | ybdK | 2003-10-24 | 2004-08-17 | REL | none |
| 1IN0 | S2F | yajq protein (hi1034) | HI1034 | 2001-05-11 | 2003-06-10 | REL | none |
| 2OUT | S2F | solution structure of hi1506, a novel two domain protein from haemophilus influenzae | HI1506 | 2007-02-12 | 2007-05-01 | REL | none |
| 1JOP | S2F | yhch protein (hi0227) | HI0227 | 2001-07-30 | 2003-06-17 | REL | none |
| 1NU0 | S2F | structure of the double mutant (l6m; f134m, semet form) of yqgf from escherichia coli, a hypothetical protein | yqgF | 2003-01-30 | 2004-03-02 | REL | none |
| 1J8B | S2F | structure of ybab from haemophilus influenzae (hi0442), a protein of unknown function | HI0442 | 2001-05-21 | 2003-01-14 | REL | none |
| 1MWW | S2F | the structure of the hypothetical protein hi1388.1 from haemophilus influenzae reveals a tautomerase/mif fold | HI1388.1 | 2002-10-01 | 2003-11-18 | REL | none |
| 1DBX | S2F | crystal structure of cysteinyl-trna(pro) deacylase from h. influenzae (hi1434) | HI1434 | 1999-11-03 | 2000-06-14 | REL | none |
| 1FL9 | S2F | the yjee protein | HI0065 | 2000-08-13 | 2002-08-07 | REL | 1HTW |
| 1K1E | S2F | structure of the cobalt-bound form of the deoxy-d-mannose-octulosonate 8-phosphate phosphatase (yrbi) from haemophilus influenzae (hi1679) | HI1679 | 2001-09-25 | 2002-02-27 | REL | none |
| 1J7G | S2F | structure of yihz from haemophilus influenzae (hi0670), a d-tyr-trna(tyr) deacylase | HI0670 | 2001-05-16 | 2003-04-22 | REL | none |
| 1JOG | S2F | structure of hi0074 from heamophilus influenzae reveals the fold of a substrate binding domain of a nucleotidyltransferase | HI0074 | 2001-07-29 | 2002-12-18 | REL | none |
| 2AIZ | S2F | solution structure of peptidoglycan associated lipoprotein from haemophilus influenza bound to udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine | HI0381 | 2005-08-01 | 2006-03-14 | REL | none |
| 1X6I | S2F | crystal structure of ygfy from escherichia coli | ygfY | 2004-08-11 | 2005-02-08 | REL | 1X6J |
| 1J85 | S2F | structure of yibk from haemophilus influenzae (hi0766), a truncated sequence homolog of trna (guanosine-2'-o-) methyltransferase (spou) | HI0766 | 2001-05-20 | 2003-02-25 | REL | 1MXI |
| 1LQA | S2F | tas protein from escherichia coli in complex with nadph | b2834 | 2002-05-09 | 2003-07-08 | REL | none |
| 1RXX | S2F | structure of arginine deiminase | PA5171 | 2003-12-18 | 2004-01-13 | REL | none |
| 3CA8 | S2F | crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine utilizing enzyme | ydcF | 2008-02-19 | 2008-05-06 | REL | none |
| 1OQF | S2F | crystal structure of the 2-methylisocitrate lyase | prpB | 2003-03-08 | 2004-04-27 | REL | none |
| 1IM8 | S2F | crystal structure of yeco from haemophilus influenzae (hi0319), a methyltransferase with a bound s-adenosylhomocysteine | HI0319 | 2001-05-10 | 2001-11-07 | REL | none |
| 2APN | S2F | hi1723 solution structure | HI1723 | 2005-08-16 | 2006-10-03 | REL | none |
| 1J8D | S2F | structure of the metal-free form of the deoxy-d-mannose-octulosonate 8-phosphate phosphatase (yrbi) from haemophilus influenzae (hi1679) | HI1679 | 2001-05-21 | 2002-02-27 | REL | 1K1E |
| 1MW5 | S2F | structure of hi1480 from haemophilus influenzae | HI1480 | 2002-09-27 | 2003-11-18 | REL | none |
| 1JOS | S2F | ribosome binding factor a(rbfa) | HI1288 | 2001-07-30 | 2003-06-24 | REL | none |
| 1IZM | S2F | structure of ygfb from haemophilus influenzae (hi0817), a conserved hypothetical protein | HI0817 | 2002-10-09 | 2003-12-02 | REL | none |
| 1JO0 | S2F | structure of hi1333, a hypothetical protein from haemophilus influenzae with structural similarity to rna-binding proteins | HI1333 | 2001-07-26 | 2002-11-20 | REL | none |
| 1X6J | S2F | crystal structure of ygfy from escherichia coli | ygfY | 2004-08-11 | 2005-02-08 | REL | none |
| 1MWQ | S2F | structure of hi0828, a hypothetical protein from haemophilus influenzae with a putative active-site phosphohistidine | HI0828 | 2002-09-30 | 2003-11-25 | REL | none |
| 1DBU | S2F | crystal structure of cysteinyl-trna(pro) deacylase protein from h. influenzae (hi1434) | HI1434 | 1999-11-03 | 2000-06-14 | REL | 1DBX |
| 1XAX | S2F | nmr structure of hi0004, a putative essential gene product from haemophilus influenzae | HI0004 | 2004-08-26 | 2005-01-18 | REL | none |
| 1NNX | S2F | structure of the hypothetical protein ygiw from e. coli. | ygiW | 2003-01-14 | 2004-03-09 | REL | none |
| 1NMN | S2F | structure of yqgf from escherichia coli, a hypothetical protein | yqgF | 2003-01-10 | 2004-03-02 | REL | 1NU0 |
| 1JN1 | S2F | structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from haemophilus influenzae (hi0671) | HI0671 | 2001-07-21 | 2002-08-21 | REL | none |
| 1J7H | S2F | solution structure of hi0719, a hypothetical protein from haemophilus influenzae | HI0719 | 2001-05-16 | 2003-02-11 | REL | none |
| 1JAL | S2F | ychf protein (hi0393) | HI0393 | 2001-05-30 | 2003-03-25 | REL | none |
| 1NIJ | S2F | yjia protein | yjiA | 2002-12-24 | 2003-06-24 | REL | none |
| 1NNG | S2F | structure of hi0827, a thioesterase acting on short-chain acyl-coa compounds. | HI0827 | 2003-01-13 | 2004-03-09 | Replaced by:1YLI | none |
| 3D63 | SSGCID | crystal structure of inorganic pyrophosphatase from burkholderia pseudomallei | BupsA.00023.a | 2008-05-18 | 0000-00-00 | AUTH | none |
| 3D6B | SSGCID | 2.2 a crystal structure of glutaryl-coa dehydrogenase from burkholderia pseudomallei | BupsA.00027.a | 2008-05-19 | 2008-06-03 | REL | none |
| 3D53 | SSGCID | 2.2 a crystal structure of inorganic pyrophosphatase from rickettsia prowazekii | RiprA.00023.a | 2008-05-15 | 2008-05-27 | REL | none |
| 3D64 | SSGCID | crystal structure of s-adenosyl-l-homocysteine hydrolase from burkholderia pseudomallei | BupsA.00032.a | 2008-05-18 | 2008-06-03 | REL | none |
| 3CEZ | SSGCID | crystal structure of methionine-r-sulfoxide reductase from burkholderia pseudomallei | BupsA.00033.a | 2008-02-29 | 2008-03-18 | REL | none |
| 3DAH | SSGCID | 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from burkholderia pseudomallei | BupsA.00035.a | 2008-05-29 | 2008-06-10 | REL | none |
| 3D5T | SSGCID | crystal structure of malate dehydrogenase from burkholderia pseudomallei | BupsA.00005.a | 2008-05-16 | 2008-06-03 | REL | none |
Note 1: Last updated: Jul 2 2008
back to topSequence Redundancy Statistics
Table 5: Sequence Redundancy Statistics for Non-PSI Structural Genomics Centers in North America by Experimental Status
| Sequence Identity(%) | Novel Targets
Status: Selected |
Novel Targets Status: Cloned |
Novel Targets Status: Expressed |
Novel Targets Status: Purified |
Novel Targets Status: Crystallized |
Novel Targets Status: Crystal Structure | Novel Targets Status: NMR Structure | Novel Targets Status: in PDB |
| <100 | 1919 | 1483 | 1014 | 568 | 180 | 50 | 12 | 93 |
| <90 | 1723 | 1385 | 961 | 550 | 173 | 50 | 11 | 93 |
| <70 | 1686 | 1359 | 940 | 541 | 172 | 50 | 11 | 93 |
| <50 | 1610 | 1305 | 909 | 530 | 171 | 50 | 11 | 93 |
| <30 | 1240 | 1112 | 816 | 500 | 165 | 50 | 11 | 92 |
| Last updated: 08-04-08 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long |
Table 6: Sequence Redundancy Statistics for Structures Released by Non-PSI Structural Genomics Centers in North America by Year
| Year | Released Structures | Number of Released Structures <30% Identity at Time of Release | Percent(%) of Released Structures <30% Identity(%) at Time of Release |
| <= 2000 | 2 | 1 | 50 |
| 2001 | 6 | 3 | 50 |
| 2002 | 15 | 6 | 40 |
| 2003 | 25 | 13 | 52 |
| 2004 | 18 | 11 | 61 |
| 2005 | 17 | 7 | 41 |
| 2006 | 8 | 3 | 38 |
| 2007 | 4 | 2 | 50 |
| 2008 | 13 | 4 | 31 |
| Total | 108 | 50 | 46 |
| Last updated:08-07-02 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long |
Figure 4: Comparison of Novel Structures with Number of Structures Released by Non-PSI Structural Genomics Centers in North America by Year
| Note 1: Last updated: 08-07-02 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long |