PSI TargetDB

Statistics Summary Report for NYCOMPS Center

Last updated: Jul 2 2009



Target Status Statistics

Total number of targets deposited by NYCOMPS to TargetDB: 6752

      View NYCOMPS Target List

Table 1: Status Statistics for NYCOMPS

Status Total Number of Targets(%) Relative to "Cloned" Targets(%) Relative to "Expressed" Targets(%) Relative to "Purified" Targets(%) Relative to "Crystallized" Targets
Cloned2989100.0---
Expressed210670.5100.0--
Soluble200.70.9--
Purified41013.719.5100.0-
Crystallized00.00.00.00
Diffraction-quality Crystals10.00.00.20
Diffraction10.00.00.20
NMR Assigned00.00.00.0-
HSQC00.00.00.0-
Crystal Structure00.00.00.00
NMR Structure00.00.00.0-
In PDB110.00.00.20
Work Stopped5294----
Test Target0----
Other3106----

Last updated: Jul 2 2009

Table 2: Status Statistics for NYCOMPS by Organism

Organism Total Number1 Work Stopped Cloned Expressed Purified Crystallized Crystal Structure NMR Structure In PDB2
Archaea549470267150200000
Bacteria61194765272219563900001
Total Prokaryotes66685235298921064100001
Yeast23110000000
Trypanosoma15130000000
Fly23190000000
Human23160000000
Total67525294298921064100001

Last updated: Jul 2 2009

Note 1:   Total counts in this table may differ from total number of targets. If targtet is a hybrid complex
(for example:a complex of human and mouse polypeptides) it is counted in different organism classifications.

Note 2:   Number of targets with status "in PDB" may not be equal to number of structures determined by a project. A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands). Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes the target on its target list. back to top


Deposited Structure Statistics for NYCOMPS Center

Number of Released X-Ray Structures: 0

Number of Released NMR Structures: 0

Total number of released structures from NYCOMPS center in the PDB: 0

Table 3: PDB Status Statistics for Structures from NYCOMPS

PDB StatusNumber of Structures
Total Deposited1
Released0
In Process1
Last updated: Jul 2 2009
Note 1:   "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released("Released on Publication" , "Released on Certain Date", etc.).

Table 4: List of Structures Deposited in the PDB by NYCOMPS

Total number of structures: 1

Structures of distinct targets: 11

1   A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of distinct targets

Related PDB_ID(s): PDB_ID(s) associated with the same target in targetDB

PDB_ID TitleTarget_id Deposition DateReleased Date PDB StatusRelated PDB_ID in TargetDB
ND_149 Experimental status "in PDB", PDB ID is not providedGO.3204---none

Note 1:  Last updated: Jul 2 2009

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Sequence Redundancy Statistics

Table 5: Sequence Redundancy Statistics for NYCOMPS by Experimental Status

Sequence Identity(%)Novel Targets
Status:
Selected
Novel Targets
Status:
Cloned
Novel Targets
Status:
Expressed
Novel Targets
Status:
Purified
Novel Targets
Status:
Crystallized
Novel Targets
Status:
Crystal Structure
Novel Targets
Status:
in PDB
<1005031330913260000
<904667308512640000
<703902259810920000
<50256517538020000
<306305563210000
Last updated: 09-04-28
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long

Table 6:Sequence Redundancy Statistics for Structures Released by NYCOMPS by Year

Year Released Structures Number of Released Structures <30% Identity at Time of Release Percent(%) of Released Structures <30% Identity(%) at Time of Release
Last updated:09-07-02
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long
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