Statistics Summary Report for OPPF Center
Last updated: Mar 11 2010
Target Status Statistics
Total number of targets deposited by OPPF to TargetDB: 189
View OPPF Target ListTable 1: Status Statistics for OPPF
| Status | Total Number of Targets | (%) Relative to "Cloned" Targets | (%) Relative to "Expressed" Targets | (%) Relative to "Purified" Targets | (%) Relative to "Crystallized" Targets |
| Cloned | 121 | 100.0 | - | - | - |
| Expressed | 91 | 75.2 | 100.0 | - | - |
| Soluble | 24 | 19.8 | 26.4 | - | - |
| Purified | 28 | 23.1 | 30.8 | 100.0 | - |
| Crystallized | 7 | 5.8 | 7.7 | 25.0 | 100.0 |
| Diffraction-quality Crystals | 3 | 2.5 | 3.3 | 10.7 | 42.9 |
| Diffraction | 3 | 2.5 | 3.3 | 10.7 | 42.9 |
| NMR Assigned | 0 | 0.0 | 0.0 | 0.0 | - |
| HSQC | 0 | 0.0 | 0.0 | 0.0 | - |
| Crystal Structure | 4 | 3.3 | 4.4 | 14.3 | 57.1 |
| NMR Structure | 0 | 0.0 | 0.0 | 0.0 | - |
| In PDB1 | 0 | 0.0 | 0.0 | 0.0 | 0 |
| Work Stopped | 0 | - | - | - | - |
| Test Target | 0 | - | - | - | - |
| Other | 0 | - | - | - | - |
Table 2: Status Statistics for OPPF by Organism
These statistics are derived from mapping of target sequences to GenBank using
>=98% sequence identity cut off
| Organism | Total Number1 | Work Stopped | Cloned | Expressed | Purified | Crystallized | Crystal Structure | NMR Structure | In PDB2 |
| Viruses | 10 | 0 | 4 | 4 | 4 | 1 | 1 | 0 | 0 |
| Bacteria | 79 | 0 | 76 | 57 | 20 | 6 | 3 | 0 | 0 |
| Prokaryota | 79 | 0 | 76 | 57 | 20 | 6 | 3 | 0 | 0 |
| Worm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Drosophila | 5 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 |
| Mouse | 10 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| Human | 86 | 0 | 37 | 28 | 4 | 0 | 0 | 0 | 0 |
| Eukaryota | 100 | 0 | 41 | 30 | 4 | 0 | 0 | 0 | 0 |
Last updated: Mar 11 2010
back to topSequence Redundancy Statistics
Table 3: Sequence Redundancy Statistics for OPPF by Experimental Status
| Sequence Identity(%) | Novel Targets
Status: Selected |
Novel Targets Status: Cloned |
Novel Targets Status: Expressed |
Novel Targets Status: Purified |
Novel Targets Status: Crystallized |
Novel Targets Status: Crystal Structure | Novel Targets Status: in PDB |
| <100 | 185 | 120 | 91 | 28 | 7 | 4 | 0 |
| <90 | 178 | 117 | 90 | 28 | 7 | 4 | 0 |
| <70 | 175 | 116 | 89 | 28 | 7 | 4 | 0 |
| <50 | 171 | 115 | 88 | 27 | 7 | 4 | 0 |
| <30 | 128 | 85 | 71 | 25 | 7 | 4 | 0 |
| Last updated: 10-03-08 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long |