Statistics Summary Report for OPPF Center | Last updated: Jul 2 2008 |
Target Status Statistics
Total number of targets deposited by OPPF to TargetDB: 189 View OPPF Target List
Table 1: Status Statistics for OPPF
| Status | Total Number of Targets | (%) Relative to "Cloned" Targets | (%) Relative to "Expressed" Targets | (%) Relative to "Purified" Targets | (%) Relative to "Crystallized" Targets |
| Cloned | 121 | 100.0 | - | - | - |
| Expressed | 91 | 75.2 | 100.0 | - | - |
| Soluble | 24 | 19.8 | 26.4 | - | - |
| Purified | 28 | 23.1 | 30.8 | 100.0 | - |
| Crystallized | 7 | 5.8 | 7.7 | 25.0 | 100.0 |
| Diffraction-quality Crystals | 3 | 2.5 | 3.3 | 10.7 | 42.9 |
| Diffraction | 3 | 2.5 | 3.3 | 10.7 | 42.9 |
| NMR Assigned | 0 | 0.0 | 0.0 | 0.0 | - |
| HSQC | 0 | 0.0 | 0.0 | 0.0 | - |
| Crystal Structure | 4 | 3.3 | 4.4 | 14.3 | 57.1 |
| NMR Structure | 0 | 0.0 | 0.0 | 0.0 | - |
| In PDB1 | 0 | 0.0 | 0.0 | 0.0 | 0 |
| Work Stopped | 0 | - | - | - | - |
| Test Target | 0 | - | - | - | - |
| Other | 0 | - | - | - | - |
Table 2: Status Statistics for OPPF by Organism
| Organism | Total Number1 | Work Stopped | Cloned | Expressed | Purified | Crystallized | Crystal Structure | NMR Structure | In PDB2 |
| Total Viruses | 10 | 0 | 4 | 4 | 4 | 1 | 1 | 0 | 0 |
| Bacteria | 79 | 0 | 76 | 57 | 20 | 6 | 3 | 0 | 0 |
| Total Prokaryotes | 79 | 0 | 76 | 57 | 20 | 6 | 3 | 0 | 0 |
| Nematode | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Fly | 5 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 |
| Mouse | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Human | 89 | 0 | 37 | 28 | 4 | 0 | 0 | 0 | 0 |
| Other Eukaryotes | 3 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 |
| Total Eukaryotes | 100 | 0 | 41 | 30 | 4 | 0 | 0 | 0 | 0 |
| Total | 189 | 0 | 121 | 91 | 28 | 7 | 4 | 0 | 0 |
Last updated: Jul 2 2008
Note 1:
Total counts in this table may differ from total number of targets. If targtet
is a hybrid complex
(for example:a complex of human and mouse polypeptides)
it is counted in different organism classifications.
Note 2:
Number of targets with status "in PDB". A target may reference several
PDB IDs (example: structure of the same polypeptides with different ligands).
Multiple targets in TargetDB may identify the same PDB structure when a stucture
is a result of collaboration between different centers and each center includes
the target on its target list.
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Sequence Redundancy Statistics
Table 3: Sequence Redundancy Statistics for OPPF by Experimental Status
| Sequence Identity(%) | Novel Targets
Status: Selected |
Novel Targets Status: Cloned |
Novel Targets Status: Expressed |
Novel Targets Status: Purified |
Novel Targets Status: Crystallized |
Novel Targets Status: Crystal Structure | Novel Targets Status: in PDB |
| <100 | 185 | 120 | 91 | 28 | 7 | 4 | 0 |
| <90 | 178 | 117 | 90 | 28 | 7 | 4 | 0 |
| <70 | 174 | 116 | 89 | 28 | 7 | 4 | 0 |
| <50 | 168 | 112 | 86 | 27 | 7 | 4 | 0 |
| <30 | 116 | 83 | 68 | 25 | 7 | 4 | 0 |
| Last updated: 08-04-08 |
| Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity. Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings. Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long |