Protein Structure Initiative
Print Page | Close Window

Statistics Summary Report for SECSG Center

                         Last updated: Jul 2 2008



Target Status Statistics

Total number of targets deposited by SECSG to TargetDB: 15286      View SECSG Target List

Table 1: Status Statistics for SECSG

Status Total Number of Targets(%) Relative to "Cloned" Targets(%) Relative to "Expressed" Targets(%) Relative to "Purified" Targets(%) Relative to "Crystallized" Targets
Cloned14876100.0---
Expressed641043.1100.0--
Soluble14619.822.8--
Purified8375.613.1100.0-
Crystallized2391.63.728.6100.0
Diffraction-quality Crystals1080.71.712.945.2
Diffraction1360.92.116.256.9
NMR Assigned20.00.00.2-
HSQC240.20.42.9-
Crystal Structure960.61.511.540.2
NMR Structure20.00.00.2-
In PDB1910.61.410.937
Work Stopped746----
Test Target0----
Other0----

Last updated: Jul 2 2008

Table 2: Status Statistics for SECSG by Organism

Organism Total Number1 Work Stopped Cloned Expressed Purified Crystallized Crystal Structure NMR Structure In PDB2
Archaea218913191658339311339238
Bacteria8681197865871233022020
Total Prokaryotes30571322702117051614361258
Nematode117716141177151042467819019
Mouse101111101
Human4480393126658605
Other Eukaryotes909999908
Total Eukaryotes122296141217452403219635033
Total1528674614876641083723996291

Last updated: Jul 2 2008

Note 1:   Total counts in this table may differ from total number of targets. If targtet is a hybrid complex
(for example:a complex of human and mouse polypeptides) it is counted in different organism classifications.

Note 2:   Number of targets with status "in PDB". A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
Multiple targets in TargetDB may identify the same PDB structure when a stucture is a result of collaboration between different centers and each center includes
the target on its target list.
back to top


Deposited Structure Statistics for SECSG Center

Number of Released X-Ray Structures: 89

Number of Released NMR Structures: 3

Total number of released structures from SECSG center in the PDB: 92

Table 3: PDB Status Statistics for Structures from SECSG

PDB StatusNumber of Structures
Total Deposited92
Released92
In Process0
Last updated: Jul 2 2008
Note 1:   "Total Deposited" are all structures in the PDB including structures released to the public and structures that are in the process to be released("Released on Publication" , "Released on Certain Date", etc.).

Table 4: List of Structures Deposited in the PDB by SECSG

Total number of structures: 93

Structures of distinct targets: 911

1   A target may reference several PDB IDs (example: structure of the same polypeptides with different ligands).
In this case only one structure is counted to compute number of structures of distinct targets

Related PDB_ID(s): PDB_ID(s) associated with the same target in targetDB

PDB_ID TitleTarget_id Deposition DateReleased Date PDB StatusRelated PDB_ID in TargetDB
1RYQ putative dna-directed rna polymerase, subunit e'' from pyrococcus furiosus pfu-263306-001Pfu-263306-0012003-12-222004-08-10RELnone
1XI9 alanine aminotransferase from pyrococcus furiosus pfu-1397077-001Pfu-1397077-0012004-09-212004-11-23RELnone
1XI8 molybdenum cofactor biosynthesis protein from pyrococcus furiosus pfu-1657500-001Pfu-1657500-0012004-09-212004-11-30RELnone
1SPX crystal structure of glucose dehydrogenase of caenorhabditis elegans in the apo-formD1054.82004-03-172004-03-23RELnone
2I0X hypothetical protein pf1117 from pyrococcus furiosusPfu-1066282-0012006-08-112006-10-10RELnone
2HQX crystal structure of human p100 tudor domain conserved regionHsa-P100-TDL2006-07-192006-10-10RELnone
1ROW structure of ssp-19, an msp-domain protein like family member in caenorhabditis elegansC55C2.22003-12-022003-12-23RELnone
1Z2U the 1.1a crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from caenorhabditis elegans: functional and evolutionary significanceM7.12005-03-092005-03-22RELnone
1SL7 crystal structure of calcium-loaded apo-obelin from obelia longissimaOob-Ca_H_Obelin2004-03-052004-12-28RELnone
1R7J crystal structure of the dna-binding protein sso10a from sulfolobus solfataricusSso-10a2003-10-212004-07-20RELnone
1Y81 conserved hypothetical protein pfu-723267-001 from pyrococcus furiosusPfu-723267-0012004-12-102005-01-25RELnone
1YIS structural genomics of caenorhabditis elegans: adenylosuccinate lyaseR06C7.52005-01-122005-01-25RELnone
1XQU hit family hydrolase from clostridium thermocellum cth-393Cth-3932004-10-132004-12-14RELnone
1YO6 crystal structure of the putative carbonyl reductase sniffer of caenorhabditis elegansC55A6.52005-01-262005-02-15RELnone
2HQ4 crystal structure of orf 1580 a hypothetical protein from pyrococcus horikoshiiPH15802006-07-182006-09-19RELnone
2HPV crystal structure of fmn-dependent azoreductase from enterococcus faecalisFS-Azoa2006-07-172006-09-12RELnone
1Y82 conserved hypothetical protein pfu-367848-001 from pyrococcus furiosusPfu-367848-0012004-12-102005-01-25RELnone
2IC7 crystal structure of maltose transacetylase from geobacillus kaustophilusGK1921-1 NON-RSGI:gka001001921.22006-09-122006-11-07RELnone
2HQ1 crystal structure of orf 1438 a putative glucose/ribitol dehydrogenase from clostridium thermocellumCth-14382006-07-182006-09-12RELnone
2A4K 3-oxoacyl-[acyl carrier protein] reductase from thermus thermophilus tt0137Tth-TT0137 NON-RSGI:ttk003000137.12005-06-292006-01-10RELnone
1R9H structural genomics of c.elegans: fkbp-type peptidylprolyl isomeraseF31D4.32003-10-292003-12-02RELnone
1SGW putative abc transporter (atp-binding protein) from pyrococcus furiosus pfu-867808-001Pfu-867808-0012004-02-242004-08-10RELnone
1MJF putative spermidine synthetase from pyrococcus furiosus pfu-132382Pfu-132382-0012002-08-272002-09-18RELnone
1SF0 backbone solution structure of mixed alpha/beta protein pf1061Pfu-1016054-0012004-02-192004-04-13RELnone
1YBZ conserved hypothetical protein from pyrococcus furiosus pfu-1581948-001Pfu-1581948-0012004-12-212005-02-01RELnone
2HIQ crystal structure of jw1657 from escherichia coliEco-JW1657 NON-RSGI:eco002001657.12006-06-292006-09-12RELnone
2HPS crystal structure of coelenterazine-binding protein from renilla muelleriCBP2006-07-172007-01-09RELnone
1YD7 conserved hypothetical protein pfu-1647980-001 from pyrococcus furiosusPfu-1647980-0012004-12-232005-02-08RELnone
2IDG crystal structure of hypothetical protein af0160 from archaeoglobus fulgidusAF01602006-09-152006-11-14RELnone
1YCY conserved hypothetical protein pfu-1806301-001 from pyrococcus furiosusPfu-1806301-0012004-12-232005-02-22RELnone
1Q34 crystal structures of two ubc (e2) enzymes of the ubiquitin-conjugating system in caenorhabditis elegansC35B1.12003-07-282003-08-05RELnone
1XK8 divalent cation tolerant protein cuta from homo sapiens o60888O608882004-09-272004-10-19RELnone
1ZGH methionyl-trna formyltransferase from clostridium thermocellumCth-23362004-09-162004-11-23RELnone
1SEN endoplasmic reticulum protein rp19 o95881O958812004-02-172004-07-13RELnone
1S36 crystal structure of a ca2+-discharged photoprotein: implications for the mechanisms of the calcium trigger and the bioluminescenceOob-Ca_W92F_Obelin2004-01-122004-10-05RELnone
1XE1 hypothetical protein from pyrococcus furiosus pfu-880080-001Pfu-880080-0012004-09-082004-09-21RELnone
1PZV crystal structures of two ubc (e2) enzymes of the ubiquitin-conjugating system in caenorhabditis elegansF58A4.102003-07-142003-07-22RELnone
1YBY conserved hypothetical protein cth-95 from clostridium thermocellumCth-952004-12-212005-02-01RELnone
1XHC nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-001Pfu-1140779-0012004-09-172004-11-23RELnone
1OOE structural genomics of caenorhabditis elegans : dihydropteridine reductaseT03F6.12003-03-032003-03-18RELnone
1XHL crystal structure of putative tropinone reductase-ii from caenorhabditis elegans with cofactor and substrateF25D1.52004-09-202004-09-28RELnone
2IEL crystal structure of tt0030 from thermus thermophilusTT00302006-09-192006-11-14RELnone
1XRG conserved hypothetical protein from clostridium thermocellum cth-2968Cth-29682004-10-142004-12-14RELnone
1Y80 structure of a corrinoid (factor iiim)-binding protein from moorella thermoaceticaB122004-12-102005-01-25RELnone
1NNQ rubrerythrin from pyrococcus furiosus pfu-1210814Pfu-1210814-0012003-01-142004-03-02RELnone
1NNH hypothetical protein from pyrococcus furiosus pfu-1801964Pfu-1801964-0012003-01-132004-02-03RELnone
1YQ1 structural genomics of caenorhabditis elegans: glutathione s-transferaseF37B1.52005-01-312005-02-15RELnone
1YBX conserved hypothetical protein cth-383 from clostridium thermocellumCth-3832004-12-212005-02-01RELnone
2F8P crystal structure of obelin following ca2+ triggered bioluminescence suggests neutral coelenteramide as the primary excited stateCadis-obelin2005-12-032006-02-14RELnone
1XI3 thiamine phosphate pyrophosphorylase from pyrococcus furiosus pfu-1255191-001Pfu-1255191-0012004-09-212004-09-28RELnone
1JJF structural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase z of clostridium thermocellumCth-FAEZ2001-07-052001-10-31RELnone
1VJK putative molybdopterin converting factor, subunit 1 from pyrococcus furiosus, pfu-562899-001Pfu-562899-0012004-03-102004-08-10RELnone
1T7S structural genomics of caenorhabditis elegans: structure of bag-1 proteinAAD161252004-05-102004-05-18RELnone
1XX7 conserved hypothetical protein from pyrococcus furiosus pfu-403030-001Pfu-403030-0012004-11-042004-12-28RELnone
1XG7 conserved hypothetical protein pfu-877259-001 from pyrococcus furiosusPfu-877259-0012004-09-162004-11-23RELnone
2HR5 pf1283- ruberythrin from pyrococcus furiosus iron bound formPfu-1210814-0022006-07-192006-10-17RELnone
2HQ8 crystal structure of coelenterazine-binding protein from renilla muelleri in the ca loaded apo formCBP+Ca2006-07-182006-09-12RELnone
1NXC structure of mouse golgi alpha-1,2-mannosidase ia reveals the molecular basis for substrate specificity among class i enzymes (family 47 glycosidases)Mum-ManA12003-02-102004-05-04RELnone
1PRY structure determination of fibrillarin homologue from hyperthermophilic archaeon pyrococcus furiosus (pfu-65527)Pfu-65527-0012003-06-202004-03-09RELnone
1Y6J l-lactate dehydrogenase from clostridium thermocellum cth-1135Cth-11352004-12-062004-12-14RELnone
1YB3 conserved hypothetical protein pfu-178653-001 from pyrococcus furiosusPfu-178653-0012004-12-192005-02-01RELnone
1XMA structure of a transcriptional regulator from clostridium thermocellum cth-833Cth-8332004-10-012004-12-14RELnone
2HPK crystal structure of photoprotein berovin from beroe abyssicolaBab-Berovin(Ba13)2006-07-172007-07-03RELnone
1MO0 structural genomics of caenorhabditis elegans: triose phosphate isomeraseAAA798462002-09-062002-09-13RELnone
1T9F structural genomics of caenorhabditis elegans: structure of a protein with unknown functionR12E2.132004-05-162004-05-25RELnone
2HJM crystal structure of a singleton protein pf1176 from p. furiosusPF11762006-06-302007-07-03RELnone
1VKA southeast collaboratory for structural genomics: hypothetical human protein q15691 n-terminal fragmentQ156912004-05-102004-07-13RELnone
2HPW green fluorescent protein from clytia gregariaGFP2006-07-172006-09-12RELnone
1TWL inorganic pyrophosphatase from pyrococcus furiosus pfu-264096-001Pfu-264096-0012004-07-012004-11-23RELnone
2ICU crystal structure of hypothetical protein yedk from escherichia coliEco-JW1916 NON-RSGI:eco002001916.12006-09-132006-11-07RELnone
1VKC putative acetyl transferase from pyrococcus furiosusPfu-35386-0012004-05-112004-12-14RELnone
1T0Y solution structure of a ubiquitin-like domain from tubulin-binding cofactor bF53F4.3 CESG:GO.339102004-04-132004-04-27RELnone
1UPS glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase from clostridium perfringensCpe-EBGal2003-10-102004-11-25RELnone
1XKQ crystal structure of short-chain dehydrogenase/reductase of unknown function from caenorhabditis elegans with cofactorR05D8.72004-09-292004-10-12RELnone
1YEM conserved hypothetical protein pfu-838710-001 from pyrococcus furiosusPfu-838710-0012004-09-282004-12-14RELnone
1XI6 extragenic suppressor from pyrococcus furiosus pfu-1862794-001Pfu-1862794-0012004-09-212004-11-30RELnone
1OOJ structural genomics of caenorhabditis elegans : calmodulinT21H3.32003-03-032003-03-25RELnone
1RWD backbone nmr structure of a mutant p. furiosus rubredoxin using residual dipolar couplingsPfu-1210573-0012002-06-262002-07-10RELnone
1LPL structural genomics of caenorhabditis elegans: cap-gly domain of f53f4.3F53F4.32002-05-082002-05-22REL1T0Y 1TOV
2HQE crystal structure of human p100 tudor domain: large fragmentHsa-P100-TDS2006-07-182007-07-03RELnone
1QWK structural genomics of caenorhabditis elegans: hypothetical 35.2 kda protein (aldose reductase family member)C07D8.62003-09-022003-09-16RELnone
1ZD0 crystal structure of pfu-542154 conserved hypothetical proteinPfu-542154-0012005-04-132005-05-17RELnone
2FZF hypothetical protein pfu-1136390-001 from pyrococcus furiosusPfu-1136390-0012006-02-092006-02-21RELnone
1VK1 conserved hypothetical protein from pyrococcus furiosus pfu-392566-001Pfu-392566-0012004-04-132004-08-10RELnone
1XHO chorismate mutase from clostridium thermocellum cth-682Cth-6822004-09-202004-11-23RELnone
1TOV structural genomics of caenorhabditis elegans: cap-gly domain of f53f4.3F53F4.32004-06-152004-07-27RELnone
1SL8 calcium-loaded apo-aequorin from aequorea victoriaAae-Aeq2004-03-052004-12-28RELnone
1NNW hypothetical protein from pyrococcus furiosus pfu-1218608Pfu-1218608-0012003-01-142003-02-11RELnone
1L7L crystal structure of pseudomonas aeruginosa lectin 1 determined by single wavelength anomalous scattering phasing methodPae-lectin12002-03-152002-12-11RELnone
2IA0 transcriptional regulatory protein pf0864 from pyrococcus furiosus a member of the asnc family (pf0864)Pfu-839232-0012006-09-062006-10-31RELnone
1PGV structural genomics of caenorhabditis elegans: tropomodulin c-terminal domainC06A5.72003-05-282003-06-10RELnone
1SHE conserved hypothetical protein from pyrococcus furiosus pfu-871755-001Pfu-871755-0012004-02-252004-08-10Replaced by:2PK8none
1YE7 conserved hypothetical protein tt0235 from thermus thermophilusTth-02352004-12-280000-00-00WDRNnone

Note 1:  Last updated: Jul 2 2008

back to top

Sequence Redundancy Statistics

Table 5: Sequence Redundancy Statistics for SECSG by Experimental Status

Sequence Identity(%)Novel Targets
Status:
Selected
Novel Targets
Status:
Cloned
Novel Targets
Status:
Expressed
Novel Targets
Status:
Purified
Novel Targets
Status:
Crystallized
Novel Targets
Status:
Crystal Structure
Novel Targets
Status:
NMR Structure
Novel Targets
Status:
in PDB
<1001467514281617982823492287
<901440314011606382223290285
<701396513596594481623089285
<501284612587566779722486282
<3090069440462771520179276
Last updated: 08-04-08
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long

Table 6:Sequence Redundancy Statistics for Structures Released by SECSG by Year

Year Released Structures Number of Released Structures <30% Identity at Time of Release Percent(%) of Released Structures <30% Identity(%) at Time of Release
200111100
20025240
20039111
2004421536
200514964
200617635
20074250
Total923639
Last updated:08-07-02
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in the PDB which are at least 20 amino acids long
back to top

© RCSB PDB