PSI TargetDB

Statistics Summary Report for SGC Center

Last updated: Mar 11 2010



Target Status Statistics

Total number of targets deposited by SGC to TargetDB: 107

      View SGC Target List

Table 1: Status Statistics for SGC

Status Total Number of Targets(%) Relative to "Cloned" Targets(%) Relative to "Expressed" Targets(%) Relative to "Purified" Targets(%) Relative to "Crystallized" Targets
Cloned107100.0---
Expressed9891.6100.0--
Soluble6157.062.2--
Purified4743.948.0100.0-
Crystallized1816.818.438.3100.0
Diffraction-quality Crystals21.92.04.311.1
Diffraction00.00.00.00.0
NMR Assigned00.00.00.0-
HSQC00.00.00.0-
Crystal Structure00.00.00.00.0
NMR Structure00.00.00.0-
In PDB100.00.00.00
Work Stopped0----
Test Target0----
Other0----

Last updated: Mar 11 2010

Table 2: Status Statistics for SGC by Organism

These statistics are derived from mapping of target sequences to GenBank using >=98% sequence identity cut off

Organism Total Number1 Work Stopped Cloned Expressed Purified Crystallized Crystal Structure NMR Structure In PDB2
Bacteria1401414143000
Prokaryota1401414143000
Mouse190191465000
Human93093843315000
Eukaryota93093843315000

Last updated: Mar 11 2010

Note 1:   Total counts in this table may differ from total number of targets and structures. A target is counted in different organism specifications if:
- a target is mapped to different organisms
- a targtet is a hybrid complex (for example:a complex of human and mouse polypeptides)

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Sequence Redundancy Statistics

Table 3: Sequence Redundancy Statistics for SGC by Experimental Status

Sequence Identity(%)Novel Targets
Status:
Selected
Novel Targets
Status:
Cloned
Novel Targets
Status:
Expressed
Novel Targets
Status:
Purified
Novel Targets
Status:
Crystallized
Novel Targets
Status:
Crystal Structure
Novel Targets
Status:
in PDB
<10010710798471800
<9010610698471800
<7010410496461800
<50969691431800
<30597071371700
Last updated: 10-03-08
Sequence redundancy is calculated by clustering analysis using BLASTClust program with similarity threshold set to percent of sequence identity.   Please view detailed explanation of sequence redundancy calculations and BLASTClust threshold settings.  Sequence redundancy calculations are based on comparison to all protein sequences in TargetDB which are in the same experimental status category and at least 20 amino acids long
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