TargetDB | Target Search for Structural Genomics

Last updated: May 07, 2008

TargetDB, a target registration database, provides status and tracking information on the progress of the production and solutions of structures. Search sequences from the NIH P50 Structural Genomics Center and other structural projects below.

Experimental progress reports for SG projects are available at http://sg.pdb.org/target_centers.html

Download all targets. (XML1 and tab delimited formats)
Download target data Document Type Definition (DTD). Last updated June 26 2007
1 The XML document is organized according to the recommendations of the International Task Force on Target Tracking.
Target data Document Type Definition (DTD) diagram (JPG)
Previous version of TargetDB DTD
Previous version of TargetDB DTD diagram(JPG)
Guidelines for preparing TargetDB data file. Last update: May 25, 2005
Target Status Query Feature

Target sequence lists are also maintained at the following contributing sites:

Using the Target Search Form:

Enter text and/or select menu options below to define the desired target search, select a result format, and click the SUBMIT button to execute the query.
All form attributes are optional. If no options are entered a query will return all of the NIH target entries in the database.
Click on any attribute name for an explanation and examples of the attribute.
For a FASTA sequence comparison, enter the one-letter code sequence into the sequence text box.

Project Target ID:

PDB ID:

PFAM ID:

Status:

Site:

Include Data From:

Target Data Updated:

after
before

Result Format: HTML Format FASTA Format XML Format

Descriptions of attributes and result output formats.
Questions may be sent to target-help@deposit.rcsb.org.

TargetDB: a target registration database for structural genomics projects
Li Chen, Rose Oughtred, Helen M.Berman and John Westbrook Bioinformatics 2004 20(16):2860-2862